Basic Information
Locus ID:
Pt_Chr0204064
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 140718299 | 140724665 | - | Pt_Chr0204064 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.08 | 85,265.57 Da | 58.49 | 67.46 | -0.61 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 410 | 445 | 1.3E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 584 | 622 | 0.088 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 452 | 488 | 0.0048 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 305 | 336 | 1.5E-7 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 302 | 763 | 3.05E-54 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 293 | 674 | 4.2E-58 | IPR015943 |
| SMART | SM00320 | WD40_4 | 298 | 337 | 3.8E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 491 | 529 | 22.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 408 | 446 | 1.2E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 449 | 488 | 4.0E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 582 | 623 | 0.084 | IPR001680 |
| SMART | SM00320 | WD40_4 | 542 | 581 | 24.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 415 | 455 | 12.981398 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 455 | 489 | 10.100143 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 305 | 346 | 15.086744 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 305 | 338 | 12.341042 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 415 | 449 | 10.390142 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 455 | 489 | 12.112524 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 324 | 338 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 324 | 338 | 3.8E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 475 | 489 | 3.8E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 433 | 447 | 3.8E-5 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 252 | 267 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 92 | 143 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 194 | 228 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 29 | 49 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 275 | 290 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 194 | 294 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G54200.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_044413348.1 | WD repeat-containing protein 44-like isoform X1 [Triticum aestivum] | 0 |
| Q9R037 | WD repeat-containing protein 44 OS=Rattus norvegicus OX=10116 GN=Wdr44 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6PPH2 | WD_REPEATS_REGION domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology