Basic Information
Locus ID:
Pt_Chr0203993
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
AT hook motif family protein, expressed
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 137834412 | 137843047 | + | Pt_Chr0203993 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.09 | 79,121.72 Da | 48.69 | 67.58 | -0.89 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF63748 | Tudor/PWWP/MBT | 447 | 494 | 2.63E-8 | - |
| Gene3D | G3DSA:2.30.30.140 | - | 447 | 495 | 4.0E-11 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 191 | 210 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 211 | 232 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 553 | 579 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 328 | 389 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 612 | 640 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 191 | 262 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 587 | 601 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 286 | 419 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 650 | 673 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 547 | 723 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 293 | 312 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 690 | 714 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G47690.1 | binding. | 0 |
| RefSeq | XP_047081983.1 | sister chromatid cohesion protein PDS5 homolog C [Lolium rigidum] | 0 |
| B6EUB3 | Sister chromatid cohesion protein PDS5 homolog A OS=Arabidopsis thaliana OX=3702 GN=PDS5A PE=1 SV=1 | 0 | |
| TrEMBL | A0A453P2V3 | Tudor domain-containing protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology