Basic Information
Locus ID:
Pt_Chr0203851
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
nucleic acid binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 132891390 | 132894751 | - | Pt_Chr0203851 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.74 | 42,042.29 Da | 39.79 | 63.45 | -0.64 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 3 | 80 | 1.26E-10 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 1 | 72 | 6.2E-9 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 4 | 73 | 7.6E-5 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 3 | 77 | 10.752462 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 335 | 349 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 365 | 379 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 225 | 385 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 228 | 259 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 269 | 302 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G17720.1 | RNA-binding (RRM/RBD/RNP motifs) family protein. | 0 |
| RefSeq | XP_047077772.1 | binding partner of ACD11 1-like [Lolium rigidum] | 0 |
| Q9LFD5 | Binding partner of ACD11 1 OS=Arabidopsis thaliana OX=3702 GN=BPA1 PE=1 SV=1 | 0 | |
| TrEMBL | I1ICU0 | RRM domain-containing protein OS=Brachypodium distachyon OX=15368 GN=100834408 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology