Basic Information
Locus ID:
Pt_Chr0203812
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Ankyrin repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 131463875 | 131467614 | - | Pt_Chr0203812 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.62 | 33,279.32 Da | 42.19 | 95.11 | -0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 20 | 81 | 4.2E-9 | IPR020683 |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 88 | 207 | 6.1E-16 | IPR020683 |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 223 | 277 | 4.5E-8 | IPR020683 |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 20 | 278 | 5.55E-51 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 152 | 286 | 6.2E-27 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 12 | 151 | 6.8E-32 | IPR036770 |
| SMART | SM00248 | ANK_2a | 50 | 79 | 5.1E-6 | IPR002110 |
| SMART | SM00248 | ANK_2a | 180 | 209 | 5.4E-6 | IPR002110 |
| SMART | SM00248 | ANK_2a | 117 | 147 | 2.3 | IPR002110 |
| SMART | SM00248 | ANK_2a | 83 | 112 | 0.011 | IPR002110 |
| SMART | SM00248 | ANK_2a | 223 | 252 | 1.9E-4 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 117 | 138 | 8.629499 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 50 | 81 | 12.7794 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 180 | 212 | 12.79626 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 223 | 255 | 11.86141 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 180 | 205 | 12.461023 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 223 | 254 | 10.656889 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 117 | 138 | 8.613973 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 83 | 114 | 9.118069 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 50 | 82 | 13.89137 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 83 | 115 | 10.20539 | IPR002110 |
| PRINTS | PR01415 | Ankyrin repeat signature | 181 | 196 | 1.9E-6 | IPR002110 |
| PRINTS | PR01415 | Ankyrin repeat signature | 239 | 253 | 1.9E-6 | IPR002110 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G57740.1 | XB3 ortholog 2 in Arabidopsis thaliana. ubiquitin ligase | 0 |
| RefSeq | XP_047082797.1 | probable E3 ubiquitin-protein ligase XBOS32 isoform X2 [Lolium rigidum] | 0 |
| Q6KAE5 | Probable E3 ubiquitin-protein ligase XBOS32 OS=Oryza sativa subsp. japonica OX=39947 GN=XBOS32 PE=2 SV=2 | 0 | |
| TrEMBL | A0A3B6QMS3 | ANK_REP_REGION domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology