Basic Information
Locus ID:
Pt_Chr0203749
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Short Name:
TTG1
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 129222026 | 129223096 | - | Pt_Chr0203749 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.02 | 38,413.74 Da | 49.34 | 88.06 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 183 | 214 | 0.058 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 268 | 304 | 0.019 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 31 | 307 | 1.55E-35 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 76 | 355 | 4.1E-37 | IPR015943 |
| SMART | SM00320 | WD40_4 | 75 | 114 | 36.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 176 | 214 | 1.1E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 133 | 173 | 1.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 265 | 305 | 1.8E-6 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 183 | 223 | 9.104886 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 272 | 306 | 9.739832 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 292 | 306 | - | IPR019775 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G24520.1 | Transducin/WD40 repeat-like superfamily protein. Required for the accumulation of purple anthocyanins in leaves and stems. Involved in trichome and root hair development. Controls epidermal cell fate specification. Affects dihydroflavonol 4-reductase gene expression. It is thought that a ternary complex composed of TT2, TT8 and TTG1 is necessary for correct expression of BAN in seed endothelium. Based on clonal analysis and other methonds TTG1 has been shown to act non-cell autonomously and to move via plasmodesmata between cells.Localization and levels of TTG1 affect patterning of leaf trichomes. | 0 |
| RefSeq | XP_044952062.1 | protein TRANSPARENT TESTA GLABRA 1 [Hordeum vulgare subsp. vulgare] | 0 |
| Q9XGN1 | Protein TRANSPARENT TESTA GLABRA 1 OS=Arabidopsis thaliana OX=3702 GN=TTG1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2H4V102 | WD40 transcription factor OS=Hordeum vulgare OX=4513 GN=WD40 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology