Basic Information
Locus ID:
Pt_Chr0203712
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
zinc finger CCCH domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 128577574 | 128582935 | + | Pt_Chr0203712 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.54 | 49,963.04 Da | 26.31 | 74.56 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 146 | 181 | 7.7E-6 | IPR001680 |
| Pfam | PF18345 | Zinc finger domain | 117 | 135 | 7.1E-7 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 333 | 367 | 0.016 | IPR001680 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 147 | 421 | 7.85E-35 | IPR011047 |
| SUPERFAMILY | SSF90229 | CCCH zinc finger | 112 | 136 | 1.57E-6 | IPR036855 |
| Gene3D | G3DSA:2.30.30.1190 | - | 110 | 143 | 1.8E-5 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 321 | 462 | 3.7E-19 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 144 | 314 | 3.0E-24 | IPR015943 |
| SMART | SM00356 | c3hfinal6 | 30 | 54 | 0.72 | IPR000571 |
| SMART | SM00320 | WD40_4 | 418 | 455 | 65.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 265 | 302 | 3.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 184 | 219 | 150.0 | IPR001680 |
| SMART | SM00356 | c3hfinal6 | 113 | 137 | 1.2E-4 | IPR000571 |
| SMART | SM00320 | WD40_4 | 372 | 415 | 15.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 221 | 258 | 5.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 142 | 181 | 3.4E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 331 | 368 | 3.7E-4 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 149 | 181 | 11.418318 | - |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 111 | 138 | 14.821259 | IPR000571 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 29 | 55 | 9.751145 | IPR000571 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 149 | 190 | 14.318126 | IPR001680 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 355 | 369 | 5.8E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 402 | 416 | 5.8E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 168 | 182 | 5.8E-5 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 31 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 57 | 88 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G25440.1 | zinc finger WD40 repeat protein 1. | 0 |
| RefSeq | XP_037451908.1 | zinc finger CCCH domain-containing protein 17 [Triticum dicoccoides] | 0 |
| Q0DYP5 | Zinc finger CCCH domain-containing protein 17 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0677700 PE=2 SV=2 | 0 | |
| TrEMBL | A0A0E0K3K8 | Zinc finger CCCH domain-containing protein 48 OS=Oryza punctata OX=4537 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology