Basic Information
Locus ID:
Pt_Chr0203294
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
PPR repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 114651913 | 114657721 | + | Pt_Chr0203294 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.30 | 65,803.35 Da | 46.00 | 85.63 | -0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00195 | UBCc | 38 | 171 | 1.98932E-38 | IPR000608 |
| Pfam | PF01535 | PPR repeat | 419 | 445 | 1.9E-8 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 219 | 248 | 1.0 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 291 | 310 | 0.61 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 455 | 483 | 0.67 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 493 | 517 | 0.19 | IPR002885 |
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 38 | 172 | 1.4E-36 | IPR000608 |
| Pfam | PF01535 | PPR repeat | 324 | 344 | 0.0067 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 191 | 215 | 0.32 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 389 | 416 | 3.5E-4 | IPR002885 |
| SUPERFAMILY | SSF54495 | UBC-like | 20 | 185 | 3.03E-47 | IPR016135 |
| SUPERFAMILY | SSF48452 | TPR-like | 283 | 448 | 8.85E-5 | IPR011990 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 30 | 183 | 3.6E-45 | IPR016135 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 184 | 276 | 1.1E-15 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 365 | 448 | 8.4E-17 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 277 | 364 | 2.4E-12 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 449 | 601 | 1.8E-17 | IPR011990 |
| SMART | SM00212 | ubc_7 | 37 | 179 | 8.9E-35 | - |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 323 | 345 | 4.8E-4 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 219 | 252 | 8.7E-4 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 388 | 413 | 3.7E-4 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 419 | 445 | 2.6E-6 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 493 | 518 | 9.2E-4 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 217 | 251 | 9.646002 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 416 | 446 | 10.884628 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 320 | 354 | 9.448698 | IPR002885 |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 34 | 179 | 37.449345 | IPR000608 |
| ProSitePatterns | PS00183 | Ubiquitin-conjugating (UBC) active site signature. | 106 | 121 | - | IPR023313 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 16 | 35 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G36800.1 | RUB1 conjugating enzyme 1. RUB1 conjugating enzyme that conjugates CUL1 and is involved in auxin response and embryogenesis. RCE1 protein physically interacts with RBX1, which may be the E3 for CUL1. | 0 |
| RefSeq | XP_047079589.1 | pentatricopeptide repeat-containing protein At5g66500, mitochondrial-like [Lolium rigidum] | 0 |
| Q9SDY5 | NEDD8-conjugating enzyme Ubc12 OS=Arabidopsis thaliana OX=3702 GN=RCE1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8I6XR54 | Pentatricopeptide repeat-containing protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_24052 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30208140 |
| Arecaceae | Cocos nucifera | 1 | COCNU_11G002290 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103715219 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_10.1305.V1.1 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G66500.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10003984m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g30230.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB06g015650.2N |
| Casuarinaceae | Casuarina glauca | 1 | Cgl05G0078 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-980 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.2372 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_1BG0068400 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0292580.1.CDS1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_024169, gene-QYE76_025379, gene-QYE76_072021 |
| Poaceae | Oryza coarctata | 1 | Oco01G011340 |
| Poaceae | Oryza sativa | 2 | LOC_Os01g33070.1, LOC_Os03g42650.2 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G458200 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0203294, Pt_Chr0700218 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr01G011860, Chr12G024800 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G504300 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC3AG045390 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G322700.1.cds1, TraesCS3B02G342936.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb413360_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-52402 |
| Salicaceae | Populus euphratica | 1 | populus_peu23603 |