Basic Information
Locus ID:
Pt_Chr0203032
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Belongs to the helicase family. RecQ subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 106949674 | 106956138 | + | Pt_Chr0203032 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.97 | 86,549.47 Da | 51.01 | 78.05 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17920 | DEXHc_RecQ | 59 | 260 | 4.59508E-109 | - |
| Pfam | PF00270 | DEAD/DEAH box helicase | 75 | 240 | 1.0E-20 | IPR011545 |
| Pfam | PF16124 | RecQ zinc-binding | 385 | 457 | 7.1E-11 | IPR032284 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 52 | 252 | 5.67E-41 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 259 | 471 | 2.01E-28 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 261 | 352 | 4.6E-21 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 41 | 260 | 3.1E-90 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 357 | 474 | 1.5E-21 | IPR027417 |
| SMART | SM00487 | ultradead3 | 67 | 269 | 2.4E-31 | IPR014001 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 60 | 462 | 4.4E-123 | IPR004589 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 79 | 253 | 24.291063 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 280 | 448 | 9.308894 | IPR001650 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 766 | 781 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 728 | 781 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 653 | 713 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 675 | 689 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 742 | 757 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G35740.1 | DEAD/DEAH box RNA helicase family protein . Encodes RECQ3, an ATP-dependent helicase. | 0 |
| RefSeq | XP_047082782.1 | ATP-dependent DNA helicase Q-like 3 isoform X2 [Lolium rigidum] | 0 |
| Q9FT72 | ATP-dependent DNA helicase Q-like 3 OS=Arabidopsis thaliana OX=3702 GN=RECQL3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6PQB5 | ATP-dependent DNA helicase OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology