Basic Information
Locus ID:
Pt_Chr0202529
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
disease resistance protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 91046158 | 91049871 | + | Pt_Chr0202529 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.41 | 113,148.69 Da | 46.76 | 89.80 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00931 | NB-ARC domain | 234 | 404 | 2.4E-28 | IPR002182 |
| SUPERFAMILY | SSF52058 | L domain-like | 502 | 987 | 2.83E-21 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 170 | 444 | 2.93E-43 | IPR027417 |
| Gene3D | G3DSA:1.10.10.10 | - | 424 | 512 | 8.2E-13 | IPR036388 |
| Gene3D | G3DSA:3.40.50.300 | - | 170 | 364 | 1.4E-29 | IPR027417 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 837 | 1000 | 3.8E-6 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 531 | 832 | 1.1E-25 | IPR032675 |
| PRINTS | PR00364 | Disease resistance protein signature | 789 | 805 | 3.1E-11 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 306 | 320 | 3.1E-11 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 234 | 249 | 3.1E-11 | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G14470.1 | NB-ARC domain-containing disease resistance protein. | 0 |
| RefSeq | XP_051184700.1 | putative disease resistance protein RGA1 [Lolium perenne] | 0 |
| Q9LRR4 | Putative disease resistance RPP13-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=RPPL1 PE=3 SV=1 | 0 | |
| TrEMBL | A0A452ZKC9 | NB-ARC domain-containing protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Anacardiaceae | Pistacia vera | 1 | pistato.v30229810 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103700211 |
| Poaceae | Echinochloa crus-galli | 1 | CH07.1044 |
| Poaceae | Hordeum vulgare | 6 | HORVU.MOREX.r3.1HG0005640.1, HORVU.MOREX.r3.5HG0529550.1 ... |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_000489, gene-QYE76_047577 |
| Poaceae | Oryza coarctata | 5 | Oco04G008120, Oco14G016700, Oco23G006660, Oco24G006330 ... |
| Poaceae | Oryza sativa | 10 | LOC_Os02g18000.1, LOC_Os02g18070.1, LOC_Os02g18080.1 ... |
| Poaceae | Paspalum vaginatum | 3 | gene-BS78_04G121500, gene-BS78_08G073100, gene-BS78_K161200 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0202529 |
| Poaceae | Thinopyrum elongatum | 22 | Tel1E01G609700, Tel2E01G100400, Tel2E01G1032200 ... |
| Poaceae | Triticum dicoccoides | 30 | gene_TRIDC1AG050140, gene_TRIDC1BG056960 ... |
| Poaceae | Triticum aestivum | 49 | TraesCS1B02G044100.1, TraesCS1B02G044200.3 ... |