Basic Information
Locus ID:
Pt_Chr0202331
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
XPC-binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 85091115 | 85097187 | - | Pt_Chr0202331 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.60 | 43,695.28 Da | 44.38 | 82.54 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01805 | Ubl_Rad23 | 1 | 74 | 1.74581E-26 | - |
| Pfam | PF00240 | Ubiquitin family | 3 | 76 | 1.0E-14 | IPR000626 |
| Pfam | PF09280 | XPC-binding domain | 288 | 343 | 8.6E-22 | IPR015360 |
| Pfam | PF00627 | UBA/TS-N domain | 365 | 401 | 5.0E-12 | IPR015940 |
| Pfam | PF00627 | UBA/TS-N domain | 146 | 183 | 6.2E-14 | IPR015940 |
| SUPERFAMILY | SSF46934 | UBA-like | 141 | 189 | 5.59E-12 | IPR009060 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 85 | 1.4E-19 | IPR029071 |
| SUPERFAMILY | SSF101238 | XPC-binding domain | 284 | 350 | 2.35E-21 | IPR036353 |
| SUPERFAMILY | SSF46934 | UBA-like | 346 | 407 | 2.09E-14 | IPR009060 |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 80 | 5.1E-24 | - |
| Gene3D | G3DSA:1.10.10.540 | - | 277 | 342 | 1.4E-25 | IPR036353 |
| Gene3D | G3DSA:1.10.8.10 | - | 138 | 188 | 5.5E-21 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 357 | 405 | 3.2E-22 | - |
| SMART | SM00165 | uba_6 | 366 | 403 | 2.3E-8 | IPR015940 |
| SMART | SM00165 | uba_6 | 145 | 185 | 4.7E-6 | IPR015940 |
| SMART | SM00213 | ubq_7 | 1 | 75 | 1.4E-18 | IPR000626 |
| SMART | SM00727 | CBM | 286 | 329 | 4.7E-4 | IPR006636 |
| TIGRFAM | TIGR00601 | rad23: UV excision repair protein Rad23 | 1 | 409 | 8.1E-108 | IPR004806 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 143 | 186 | 12.595088 | IPR015940 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 364 | 404 | 14.571051 | IPR015940 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 79 | 18.083679 | IPR000626 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 392 | 407 | 3.3E-29 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 377 | 391 | 3.3E-29 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 314 | 336 | 3.3E-29 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 360 | 376 | 3.3E-29 | IPR004806 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 80 | 100 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 80 | 108 | - | - |
| Coils | Coil | Coil | 315 | 335 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G79650.2 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 0 |
| RefSeq | XP_047081077.1 | ubiquitin receptor RAD23b-like isoform X1 [Lolium rigidum] | 0 |
| Q84L33 | Ubiquitin receptor RAD23b OS=Arabidopsis thaliana OX=3702 GN=RAD23B PE=1 SV=3 | 0 | |
| TrEMBL | F2EBG8 | Ubiquitin receptor RAD23 OS=Hordeum vulgare subsp. vulgare OX=112509 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology