Basic Information
Locus ID:
Pt_Chr0202306
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Ubiquitin fusion degradation protein UFD1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 84334698 | 84338949 | - | Pt_Chr0202306 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.95 | 49,246.79 Da | 57.10 | 77.42 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03152 | Ubiquitin fusion degradation protein UFD1 | 146 | 317 | 5.3E-80 | IPR004854 |
| Gene3D | G3DSA:3.10.330.10 | - | 242 | 315 | 1.4E-34 | - |
| Gene3D | G3DSA:2.40.40.50 | - | 139 | 240 | 9.0E-44 | IPR042299 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 418 | 440 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 325 | 449 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 372 | 402 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 33 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 32 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G21270.1 | ubiquitin fusion degradation 1. | 0 |
| RefSeq | XP_051194829.1 | uncharacterized protein LOC127308098 [Lolium perenne] | 0 |
| Q55BK0 | Ubiquitin fusion degradation protein 1 homolog OS=Dictyostelium discoideum OX=44689 GN=ufd1 PE=3 SV=1 | 0 | |
| TrEMBL | A0A8I6Y3B8 | Ubiquitin fusion degradation protein 1 homolog OS=Hordeum vulgare subsp. vulgare OX=112509 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology