Basic Information
Locus ID:
Pt_Chr0202282
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
L-type lectin-domain containing receptor kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 83297121 | 83305820 | + | Pt_Chr0202282 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.53 | 69,160.86 Da | 33.47 | 91.73 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00118 | LysM | 155 | 197 | 6.3751E-7 | IPR018392 |
| Pfam | PF00069 | Protein kinase domain | 314 | 584 | 5.1E-41 | IPR000719 |
| Pfam | PF01476 | LysM domain | 155 | 198 | 7.1E-6 | IPR018392 |
| SUPERFAMILY | SSF54106 | LysM domain | 153 | 198 | 6.93E-8 | IPR036779 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 293 | 587 | 2.56E-66 | IPR011009 |
| Gene3D | G3DSA:3.10.350.10 | LysM domain | 152 | 203 | 2.6E-8 | IPR036779 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 284 | 378 | 3.2E-22 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 401 | 609 | 3.7E-51 | - |
| SMART | SM00257 | LysM_2 | 154 | 198 | 4.6E-4 | IPR018392 |
| SMART | SM00220 | serkin_6 | 313 | 586 | 1.2E-23 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 313 | 596 | 35.127949 | IPR000719 |
| ProSiteProfiles | PS51782 | LysM domain profile. | 153 | 197 | 11.059345 | IPR018392 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 444 | 456 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 319 | 341 | - | IPR017441 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G65600.1 | Concanavalin A-like lectin protein kinase family protein. | 0 |
| RefSeq | XP_044345862.1 | L-type lectin-domain containing receptor kinase IV.4-like [Triticum aestivum] | 0 |
| Q9LSL5 | L-type lectin-domain containing receptor kinase IX.2 OS=Arabidopsis thaliana OX=3702 GN=LECRK92 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6FYW0 | Protein kinase domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.6HG0538650.1, HORVU.MOREX.r3.6HG0538670.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_016500, gene-QYE76_058420 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0202282, Pt_Chr0601036, Pt_Chr0601042 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC4BG062990 |
| Poaceae | Triticum aestivum | 4 | TraesCS3B02G588200.1, TraesCS4B02G387600.1 ... |