Basic Information
Locus ID:
Pt_Chr0202228
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
ATP synthesis coupled proton transport
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 80365871 | 80370373 | + | Pt_Chr0202228 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.83 | 30,913.23 Da | 40.57 | 65.80 | -0.57 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17058 | Ubl_SNRNP25 | 58 | 143 | 3.2617E-31 | IPR040610 |
| Pfam | PF18036 | Ubiquitin-like domain | 58 | 144 | 2.3E-24 | IPR040610 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 53 | 150 | 5.07E-20 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 55 | 153 | 2.1E-28 | - |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 58 | 140 | 9.003338 | IPR000626 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G80060.1 | Ubiquitin-like superfamily protein. | 0 |
| RefSeq | XP_047076503.1 | uncharacterized protein LOC124686637 [Lolium rigidum] | 0 |
| TrEMBL | A0A3B6NNX2 | Ubiquitin_4 domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg18251 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_25196 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah034074, Ah034736 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg21159, Sbi_jg22644 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00016274 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl62323, Sgl67026 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000019443, gene:ENSEOMG00000019602 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1BG0021330, CQ.Regalona.r1.2AG0023110 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30128450, pistato.v30250180 |
| Apiaceae | Apium graveolens | 2 | Ag11G04420, Ag6G02492 |
| Arecaceae | Cocos nucifera | 1 | COCNU_01G011030 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103718854 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.3208.V1.1 |
| Asteraceae | Flaveria trinervia | 4 | Ftri16G10204, Ftri16G30568, Ftri1G20392, Ftri2G33515 |
| Brassicaceae | Arabidopsis thaliana | 3 | AT1G80060.1, AT4G32270.1, AT5G25340.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10004912m.g.v1.0, Thhalv10026098m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp2g22200.v2.2, Sp7g30010.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB02g077910.2N, BniB03g010080.2N, BniB04g003870.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G2353 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl04G2555, Cgl06G0610 |
| Cymodoceaceae | Cymodocea nodosa | 3 | gene.Cymno01g00880, gene.Cymno05g06760, gene.Cymno06g13420 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g25970 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-709 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG01.491, evm.TU.LG07.1457 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00013298, Pov_00020223 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb1G04940, Lb2G12568 |
| Poaceae | Echinochloa crus-galli | 3 | AH07.640, BH07.765, CH01.1590 |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_2AG0104340, gene-QOZ80_2BG0157710 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0575360.1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_024795, gene-QYE76_027859, gene-QYE76_063220 |
| Poaceae | Oryza coarctata | 2 | Oco03G004510, Oco04G004500 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g09530.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G066800 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0202228 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr06G033650 |
| Poaceae | Thinopyrum elongatum | 1 | Tel6E01G346000 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC6AG024930, gene_TRIDC6BG030300 |
| Poaceae | Triticum aestivum | 3 | TraesCS6A02G173400.1, TraesCS6B02G201100.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb234770_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-33541, nbis-gene-44135 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g12342, Zma_g15090 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG17.1533, evm.TU.LG18.374, evm.TU.LG26.662 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g14240 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_10_RagTag.62 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-13621, nbisL1-mrna-25153 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-17159, nbisL1-mrna-4193 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-5034, nbisL1-mrna-9106 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000004l.173, evm.TU.utg000008l.1343 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00003954 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-17451, nbisL1-mrna-3772 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-22318, nbisL1-mrna-7857 |
| Salicaceae | Populus euphratica | 1 | populus_peu12919 |
| Solanaceae | Lycium barbarum | 4 | gene-LOC132621244, gene-LOC132636185, gene-LOC132643604 ... |
| Solanaceae | Solanum chilense | 3 | SOLCI001761000, SOLCI003611500, SOLCI006859700 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107021858, gene-LOC107022430, gene-LOC107028206 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_6479 |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G1495 |
| Zosteraceae | Zostera marina | 1 | Zosma03g36770.v3.1 |