Basic Information
Locus ID:
Pt_Chr0202212
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
LysM domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 79881554 | 79883623 | + | Pt_Chr0202212 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.37 | 72,198.44 Da | 39.33 | 87.30 | -0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00118 | LysM | 203 | 246 | 1.19437E-6 | IPR018392 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 420 | 661 | 1.2E-31 | IPR001245 |
| Pfam | PF01476 | LysM domain | 204 | 247 | 1.6E-6 | IPR018392 |
| SUPERFAMILY | SSF54106 | LysM domain | 202 | 247 | 7.19E-6 | IPR036779 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 377 | 664 | 2.7E-53 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 456 | 676 | 2.6E-49 | - |
| Gene3D | G3DSA:3.10.350.10 | LysM domain | 202 | 256 | 4.8E-10 | IPR036779 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 351 | 455 | 2.3E-11 | - |
| SMART | SM00257 | LysM_2 | 203 | 247 | 1.1E-5 | IPR018392 |
| SMART | SM00257 | LysM_2 | 135 | 183 | 0.95 | IPR018392 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 381 | 672 | 29.205803 | IPR000719 |
| ProSiteProfiles | PS51782 | LysM domain profile. | 202 | 246 | 11.711089 | IPR018392 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 315 | 338 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G33580.1 | Protein kinase superfamily protein. | 0 |
| RefSeq | XP_051194215.1 | protein LYK5 [Lolium perenne] | 0 |
| O22808 | Protein LYK5 OS=Arabidopsis thaliana OX=3702 GN=LYK5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3B6PLT5 | Protein LYK5 OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology