Basic Information
Locus ID:
Pt_Chr0202201
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 79384150 | 79386945 | + | Pt_Chr0202201 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.05 | 37,859.75 Da | 56.97 | 46.99 | -0.95 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 261 | 302 | 2.96859E-18 | - |
| Pfam | PF13639 | Ring finger domain | 261 | 302 | 2.2E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 248 | 308 | 2.52E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 224 | 308 | 4.9E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 261 | 301 | 2.7E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 261 | 302 | 12.740079 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 30 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 309 | 355 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 57 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 162 | 188 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 71 | 191 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 71 | 134 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G15820.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_047076509.1 | E3 ubiquitin-protein ligase RNF181-like isoform X3 [Lolium rigidum] | 0 |
| Q9SNB6 | E3 ubiquitin-protein ligase RDUF1 OS=Arabidopsis thaliana OX=3702 GN=RDUF1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8I6YTV4 | RING-type domain-containing protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 2 | AH07.665, CH01.1561 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_2AG0104560 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0574800.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_021194 |
| Poaceae | Oryza coarctata | 2 | Oco03G005240, Oco04G004690 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g09820.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G069000 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0202201 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr06G033510, Chr15G024830 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC6BG029770 |
| Poaceae | Triticum aestivum | 2 | TraesCS6B02G198800.1, TraesCS6D02G160300.1 |
| Poaceae | Zea mays | 1 | Zm00001eb206330_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-44122 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g15100 |