Basic Information
Locus ID:
Pt_Chr0202193
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Leucine rich repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 79039592 | 79046539 | - | Pt_Chr0202193 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.91 | 67,549.60 Da | 43.97 | 95.82 | -0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13855 | Leucine rich repeat | 119 | 178 | 1.2E-11 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 97 | 112 | 0.24 | IPR001611 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 293 | 564 | 1.6E-28 | IPR001245 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 27 | 70 | 9.1E-4 | IPR013210 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 266 | 563 | 2.81E-57 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 64 | 240 | 4.86E-29 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 271 | 365 | 1.1E-20 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 25 | 270 | 3.3E-36 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 366 | 580 | 2.8E-42 | - |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 144 | 165 | 7.44243 | IPR001611 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 288 | 568 | 28.216423 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 294 | 317 | - | IPR017441 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G22130.1 | STRUBBELIG-receptor family 8. | 0 |
| RefSeq | XP_010236315.1 | protein STRUBBELIG-RECEPTOR FAMILY 8 isoform X2 [Brachypodium distachyon] | 0 |
| Q6R2J8 | Protein STRUBBELIG-RECEPTOR FAMILY 8 OS=Arabidopsis thaliana OX=3702 GN=SRF8 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0Q3LMZ1 | Protein kinase domain-containing protein OS=Brachypodium distachyon OX=15368 GN=100823778 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology