Basic Information
Locus ID:
Pt_Chr0202104
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Short Name:
EBF1
Description:
Leucine-rich repeat - CC (cysteine-containing) subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 75746281 | 75749438 | + | Pt_Chr0202104 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.93 | 69,630.07 Da | 44.35 | 102.13 | 0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13516 | Leucine Rich repeat | 578 | 600 | 1.3 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 285 | 307 | 0.028 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 233 | 256 | 0.25 | IPR001611 |
| SUPERFAMILY | SSF52047 | RNI-like | 357 | 648 | 9.22E-38 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 180 | 434 | 2.75E-25 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 61 | 106 | 2.62E-6 | IPR036047 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 153 | 256 | 1.5E-14 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 257 | 469 | 1.4E-34 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 470 | 662 | 9.0E-35 | IPR032675 |
| SMART | SM00367 | LRR_CC_2 | 629 | 654 | 350.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 391 | 416 | 0.021 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 285 | 310 | 0.04 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 365 | 390 | 32.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 498 | 523 | 0.56 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 233 | 258 | 7.5E-7 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 259 | 284 | 1.4 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 207 | 232 | 0.067 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 525 | 550 | 0.0073 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 472 | 497 | 30.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 178 | 206 | 410.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 578 | 602 | 0.061 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 552 | 577 | 1.4 | IPR006553 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G25490.1 | EIN3-binding F box protein 1. Encodes an F-box protein involved in the ubiquitin/proteasome-dependent proteolysis of EIN3. | 0 |
| RefSeq | XP_047081199.1 | EIN3-binding F-box protein 1-like [Lolium rigidum] | 0 |
| Q9SKK0 | EIN3-binding F-box protein 1 OS=Arabidopsis thaliana OX=3702 GN=EBF1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6PJA8 | F-box domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology