Basic Information
Locus ID:
Pt_Chr0202042
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Galactose oxidase, central domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 73453755 | 73454876 | + | Pt_Chr0202042 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.93 | 39,298.06 Da | 50.36 | 77.29 | -0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13964 | Kelch motif | 112 | 162 | 2.6E-8 | - |
| Pfam | PF01344 | Kelch motif | 168 | 209 | 4.6E-5 | IPR006652 |
| Pfam | PF00646 | F-box domain | 5 | 36 | 1.9E-5 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 3 | 46 | 6.67E-6 | IPR036047 |
| SUPERFAMILY | SSF117281 | Kelch motif | 83 | 330 | 1.02E-38 | IPR015915 |
| Gene3D | G3DSA:2.120.10.80 | - | 74 | 351 | 3.5E-36 | IPR015915 |
| SMART | SM00612 | kelc_smart | 124 | 174 | 5.1E-6 | IPR006652 |
| SMART | SM00612 | kelc_smart | 176 | 223 | 0.043 | IPR006652 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G80440.1 | Galactose oxidase/kelch repeat superfamily protein. | 0 |
| RefSeq | XP_051196344.1 | F-box/kelch-repeat protein At1g80440-like [Lolium perenne] | 0 |
| Q9M8L2 | F-box/kelch-repeat protein At1g80440 OS=Arabidopsis thaliana OX=3702 GN=At1g80440 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3B6NPX5 | F-box domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology