Basic Information
Locus ID:
Pt_Chr0201882
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin- conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 66949998 | 66953382 | + | Pt_Chr0201882 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.43 | 44,001.60 Da | 45.02 | 70.03 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16571 | RING-HC_SIAHs | 144 | 182 | 8.04558E-15 | - |
| CDD | cd03829 | Sina | 260 | 388 | 4.34542E-67 | - |
| Pfam | PF03145 | Seven in absentia protein family | 188 | 387 | 8.2E-80 | IPR018121 |
| SUPERFAMILY | SSF57850 | RING/U-box | 140 | 186 | 5.78E-6 | - |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 199 | 391 | 1.18E-47 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 129 | 198 | 2.0E-6 | IPR013083 |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 251 | 387 | 1.8E-37 | IPR008974 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 199 | 250 | 9.0E-18 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 146 | 182 | 9.464913 | IPR001841 |
| ProSiteProfiles | PS51081 | Zinc finger SIAH-type profile. | 199 | 259 | 14.125784 | IPR013010 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 37 | 62 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G61790.1 | Protein with RING/U-box and TRAF-like domains. | 0 |
| RefSeq | XP_047082238.1 | E3 ubiquitin-protein ligase SINAT5-like [Lolium rigidum] | 0 |
| Q84JL3 | E3 ubiquitin-protein ligase SINAT3 OS=Arabidopsis thaliana OX=3702 GN=SINAT3 PE=1 SV=1 | 0 | |
| TrEMBL | I1HZN1 | RING-type E3 ubiquitin transferase OS=Brachypodium distachyon OX=15368 GN=100826252 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology