Basic Information
Locus ID:
Pt_Chr0201726
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
DNA recombination
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 47531236 | 47533275 | + | Pt_Chr0201726 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.70 | 32,810.44 Da | 44.13 | 67.44 | -1.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF50249 | Nucleic acid-binding proteins | 1 | 71 | 7.42E-10 | IPR012340 |
| Gene3D | G3DSA:2.40.50.140 | - | 1 | 77 | 9.5E-15 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 265 | 280 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 196 | 229 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 265 | 289 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 130 | 145 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 146 | 161 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 125 | 169 | - | - |
KEGG Pathway
KO Term:
Pathway:
ko03030 (DNA replication)
map03030 (DNA replication)
ko03420 (Nucleotide excision repair)
map03420 (Nucleotide excision repair)
ko03430 (Mismatch repair)
map03430 (Mismatch repair)
ko03440 (Homologous recombination)
map03440 (Homologous recombination)
ko03460 (Fanconi anemia pathway)
map03460 (Fanconi anemia pathway)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_044367394.1 | replication protein A 70 kDa DNA-binding subunit B-like [Triticum aestivum] | 0 |
| TrEMBL | A0A0E0HMC8 | Rep_fac-A_C domain-containing protein OS=Oryza nivara OX=4536 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology