Basic Information
Locus ID:
Pt_Chr0201701
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 45028496 | 45031692 | - | Pt_Chr0201701 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.48 | 50,636.53 Da | 45.43 | 71.20 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 194 | 453 | 5.64405E-41 | - |
| Pfam | PF08662 | Eukaryotic translation initiation factor eIF2A | 311 | 446 | 2.8E-5 | IPR013979 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 129 | 454 | 1.97E-59 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 116 | 455 | 5.1E-121 | IPR015943 |
| SMART | SM00320 | WD40_4 | 284 | 323 | 8.2E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 326 | 368 | 1.6E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 371 | 411 | 270.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 414 | 453 | 2.0E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 200 | 240 | 0.27 | IPR001680 |
| SMART | SM00320 | WD40_4 | 156 | 197 | 160.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 243 | 280 | 5.9 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 333 | 377 | 8.737287 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 421 | 454 | 13.750016 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 291 | 332 | 13.382416 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 421 | 454 | 11.391954 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 291 | 323 | 10.521959 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 440 | 454 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 131 | 147 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 30 | 55 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 29 | 55 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 131 | 160 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G13840.1 | FIZZY-related 3. | 0 |
| RefSeq | XP_051228748.1 | protein FIZZY-RELATED 3 [Lolium perenne] | 0 |
| A0A396ISC0 | B-type cell cycle switch protein ccs52B OS=Medicago truncatula OX=3880 GN=CCS52B PE=2 SV=1 | 0 | |
| TrEMBL | A0A0Q3GL00 | ANAPC4_WD40 domain-containing protein OS=Brachypodium distachyon OX=15368 GN=100839910 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology