Basic Information
Locus ID:
Pt_Chr0201617
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Src homology 3 domains
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 41712446 | 41716773 | - | Pt_Chr0201617 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.94 | 41,157.90 Da | 38.01 | 76.97 | -0.53 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14604 | Variant SH3 domain | 307 | 355 | 5.8E-9 | IPR001452 |
| SUPERFAMILY | SSF103657 | BAR/IMD domain-like | 44 | 256 | 8.16E-25 | IPR027267 |
| SUPERFAMILY | SSF50044 | SH3-domain | 264 | 357 | 1.44E-15 | IPR036028 |
| Gene3D | G3DSA:2.30.30.40 | SH3 Domains | 305 | 357 | 3.2E-16 | - |
| Gene3D | G3DSA:1.20.1270.60 | Arfaptin homology (AH) domain/BAR domain | 43 | 265 | 2.3E-12 | IPR027267 |
| SMART | SM00326 | SH3_2 | 303 | 358 | 9.2E-14 | IPR001452 |
| ProSiteProfiles | PS50002 | Src homology 3 (SH3) domain profile. | 300 | 359 | 19.279881 | IPR001452 |
| Coils | Coil | Coil | 242 | 262 | - | - |
| Coils | Coil | Coil | 184 | 211 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G34660.1 | SH3 domain-containing protein. | 0 |
| RefSeq | XP_047068201.1 | SH3 domain-containing protein 2-like isoform X1 [Lolium rigidum] | 0 |
| Q8VWF1 | SH3 domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=SH3P2 PE=1 SV=1 | 0 | |
| TrEMBL | I1J056 | SH3 domain-containing protein OS=Brachypodium distachyon OX=15368 GN=100823535 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology