halophFGD

Basic Information

Locus ID: Pt_Chr0201595

Species & Taxonomic ID: Puccinellia tenuiflora & 240906

Genome Assembly: GCA_012064385.1

Description: Speckle-type POZ protein-like protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
Chr02	41121725	41122054	-	Pt_Chr0201595

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.04	12,198.00 Da	53.55	74.22	-0.09

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00651	BTB/POZ domain	3	71	9.0E-11	IPR000210
SUPERFAMILY	SSF54695	POZ domain	1	70	9.81E-12	IPR011333
Gene3D	G3DSA:3.30.710.10	Potassium Channel Kv1.1; Chain A	1	81	1.9E-15	IPR011333

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K10523 (speckle-type POZ protein)

Pathway:

ko04340 (Hedgehog signaling pathway) map04340 (Hedgehog signaling pathway) ko04341 (Hedgehog signaling pathway - fly) map04341 (Hedgehog signaling pathway - fly)

Best hit

Source	Best Hit ID	Description	E-value
RefSeq	XP_051197252.1	BTB/POZ and MATH domain-containing protein 1-like [Lolium perenne]	0
TrEMBL	A0A453N8L4	BTB domain-containing protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1	0

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

Orthology

No orthogroup found for Pt_Chr0201595.