Basic Information
Locus ID:
Pt_Chr0201550
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Speckle-type POZ protein-like protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 39936523 | 39940104 | + | Pt_Chr0201550 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.73 | 64,233.74 Da | 30.45 | 88.72 | -0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 23 | 151 | 1.28916E-18 | IPR002083 |
| CDD | cd00121 | MATH | 337 | 378 | 1.59761E-8 | IPR002083 |
| Pfam | PF00651 | BTB/POZ domain | 182 | 291 | 5.2E-16 | IPR000210 |
| Pfam | PF00917 | MATH domain | 33 | 152 | 1.3E-4 | IPR002083 |
| Pfam | PF00651 | BTB/POZ domain | 406 | 519 | 5.1E-20 | IPR000210 |
| SUPERFAMILY | SSF54695 | POZ domain | 171 | 291 | 5.23E-21 | IPR011333 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 337 | 378 | 4.58E-8 | - |
| SUPERFAMILY | SSF54695 | POZ domain | 397 | 518 | 8.63E-25 | IPR011333 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 23 | 154 | 5.4E-22 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 336 | 385 | 6.9E-6 | IPR008974 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 161 | 323 | 6.1E-37 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 386 | 550 | 4.6E-45 | IPR011333 |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 22 | 154 | 2.4E-22 | IPR008974 |
| SMART | SM00225 | BTB_4 | 192 | 293 | 3.3E-17 | IPR000210 |
| SMART | SM00225 | BTB_4 | 415 | 521 | 1.2E-17 | IPR000210 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 415 | 477 | 15.038859 | IPR000210 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 22 | 150 | 17.987408 | IPR002083 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 192 | 251 | 14.252943 | IPR000210 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G39760.2 | BTB/POZ/MATH-domains containing protein. | 0 |
| RefSeq | XP_051197265.1 | BTB/POZ and MATH domain-containing protein 3-like [Lolium perenne] | 0 |
| O22286 | BTB/POZ and MATH domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=BPM3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6NLL0 | Speckle-type POZ protein-like protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0556170.1.CDS1 |
| Poaceae | Lolium multiflorum | 8 | gene-QYE76_020182, gene-QYE76_020183, gene-QYE76_020189 ... |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0201546, Pt_Chr0201547, Pt_Chr0201550, Pt_Chr0201587 |
| Poaceae | Thinopyrum elongatum | 6 | Tel6E01G236300, Tel6E01G236400, Tel6E01G236500 ... |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC6AG013620, gene_TRIDC6AG013660 ... |
| Poaceae | Triticum aestivum | 7 | TraesCS6A02G105200.1.cds1, TraesCS6A02G105500.1.cds1 ... |