Basic Information
Locus ID:
Pt_Chr0201547
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Speckle-type POZ protein-like protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 39768237 | 39776328 | - | Pt_Chr0201547 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.92 | 80,161.26 Da | 43.53 | 89.45 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 23 | 154 | 4.92848E-23 | IPR002083 |
| Pfam | PF00651 | BTB/POZ domain | 187 | 297 | 2.9E-14 | IPR000210 |
| Pfam | PF00651 | BTB/POZ domain | 535 | 641 | 4.1E-12 | IPR000210 |
| Pfam | PF00651 | BTB/POZ domain | 363 | 469 | 4.1E-12 | IPR000210 |
| Pfam | PF00917 | MATH domain | 34 | 155 | 2.2E-5 | IPR002083 |
| SUPERFAMILY | SSF54695 | POZ domain | 170 | 297 | 7.22E-20 | IPR011333 |
| SUPERFAMILY | SSF54695 | POZ domain | 357 | 469 | 1.16E-15 | IPR011333 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 21 | 157 | 1.62E-27 | - |
| SUPERFAMILY | SSF54695 | POZ domain | 529 | 641 | 1.16E-15 | IPR011333 |
| Gene3D | G3DSA:1.25.40.420 | - | 472 | 534 | 3.3E-14 | - |
| Gene3D | G3DSA:1.25.40.420 | - | 643 | 718 | 2.4E-15 | - |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 158 | 328 | 5.5E-40 | IPR011333 |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 22 | 157 | 4.6E-25 | IPR008974 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 347 | 471 | 3.7E-20 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 535 | 642 | 3.4E-18 | IPR011333 |
| SMART | SM00225 | BTB_4 | 535 | 642 | 6.7E-13 | IPR000210 |
| SMART | SM00225 | BTB_4 | 363 | 470 | 6.7E-13 | IPR000210 |
| SMART | SM00225 | BTB_4 | 191 | 298 | 1.6E-14 | IPR000210 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 191 | 254 | 12.949977 | IPR000210 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 363 | 426 | 11.729739 | IPR000210 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 22 | 153 | 19.751705 | IPR002083 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 535 | 598 | 11.729739 | IPR000210 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G19000.1 | BTB-POZ and MATH domain 1. | 0 |
| RefSeq | XP_047078766.1 | BTB/POZ and MATH domain-containing protein 1-like [Lolium rigidum] | 0 |
| Q8L765 | BTB/POZ and MATH domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=BPM1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6PI28 | BTB domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0556170.1.CDS1 |
| Poaceae | Lolium multiflorum | 8 | gene-QYE76_020182, gene-QYE76_020183, gene-QYE76_020189 ... |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0201546, Pt_Chr0201547, Pt_Chr0201550, Pt_Chr0201587 |
| Poaceae | Thinopyrum elongatum | 6 | Tel6E01G236300, Tel6E01G236400, Tel6E01G236500 ... |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC6AG013620, gene_TRIDC6AG013660 ... |
| Poaceae | Triticum aestivum | 7 | TraesCS6A02G105200.1.cds1, TraesCS6A02G105500.1.cds1 ... |