halophFGD

Basic Information

Locus ID: Pt_Chr0201546

Species & Taxonomic ID: Puccinellia tenuiflora & 240906

Genome Assembly: GCA_012064385.1

Description: Broad-Complex, Tramtrack and Bric a brac

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
Chr02	39740569	39741364	+	Pt_Chr0201546

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.87	22,165.25 Da	44.06	73.70	-0.29

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00651	BTB/POZ domain	73	158	1.0E-17	IPR000210
SUPERFAMILY	SSF54695	POZ domain	73	158	7.53E-20	IPR011333
Gene3D	G3DSA:3.30.710.10	Potassium Channel Kv1.1; Chain A	41	159	1.2E-23	IPR011333
Gene3D	G3DSA:6.10.250.3030	-	160	198	6.1E-10	-
SMART	SM00225	BTB_4	37	169	9.2E-8	IPR000210
ProSiteProfiles	PS50097	BTB domain profile.	51	123	13.632483	IPR000210

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K10523 (speckle-type POZ protein)

Pathway:

ko04340 (Hedgehog signaling pathway) map04340 (Hedgehog signaling pathway) ko04341 (Hedgehog signaling pathway - fly) map04341 (Hedgehog signaling pathway - fly)

Best hit

Source	Best Hit ID	Description
TAIR	AT5G19000.1	BTB-POZ and MATH domain 1.
RefSeq	XP_044414738.1	BTB/POZ and MATH domain-containing protein 1-like [Triticum aestivum]
Swiss-Prot	Q8L765	BTB/POZ and MATH domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=BPM1 PE=1 SV=1
TrEMBL	A0A453N8P4	BTB domain-containing protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

Orthology

Family	Species	Count	Orthologous Genes
Poaceae	Hordeum vulgare	1	HORVU.MOREX.r3.6HG0556170.1.CDS1
Poaceae	Lolium multiflorum	8	gene-QYE76_020182, gene-QYE76_020183, gene-QYE76_020189 ... gene-QYE76_020190, gene-QYE76_020191, gene-QYE76_020192, gene-QYE76_020193, gene-QYE76_020194
Poaceae	Puccinellia tenuiflora	4	Pt_Chr0201546, Pt_Chr0201547, Pt_Chr0201550, Pt_Chr0201587
Poaceae	Thinopyrum elongatum	6	Tel6E01G236300, Tel6E01G236400, Tel6E01G236500 ... Tel6E01G237000, Tel6E01G237100, Tel6E01G237700
Poaceae	Triticum dicoccoides	4	gene_TRIDC6AG013620, gene_TRIDC6AG013660 ... gene_TRIDC6BG019190, gene_TRIDC6BG019220
Poaceae	Triticum aestivum	7	TraesCS6A02G105200.1.cds1, TraesCS6A02G105500.1.cds1 ... TraesCS6A02G105600.1.cds1, TraesCS6B02G134600.1.cds1, TraesCS6B02G134900.1.cds1, TraesCS6D02G093900.1.cds1, TraesCS6D02G094100.1.cds1