Basic Information
Locus ID:
Pt_Chr0201502
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
RING-H2 zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 38729605 | 38730030 | - | Pt_Chr0201502 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.18 | 15,288.00 Da | 46.44 | 105.03 | 0.58 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 82 | 124 | 1.2E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 73 | 129 | 9.34E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 52 | 129 | 3.8E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 82 | 123 | 8.8E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 82 | 124 | 12.164712 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G24015.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_037460038.1 | probable E3 ubiquitin-protein ligase ATL45 [Triticum dicoccoides] | 0 |
| Q84TF5 | Probable E3 ubiquitin-protein ligase RHA4A OS=Arabidopsis thaliana OX=3702 GN=RHA4A PE=2 SV=1 | 0 | |
| TrEMBL | A0A3B6RGG0 | RING-type domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 10 | AH06.1062, BH06.1099, BH06.1102, BH06.1103, BH06.1104 ... |
| Poaceae | Eleusine coracana subsp. coracana | 8 | gene-QOZ80_6AG0516090, gene-QOZ80_6AG0516120 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.1HG0092440.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 5 | gene-QYE76_015245, gene-QYE76_029210, gene-QYE76_029211 ... |
| Poaceae | Oryza coarctata | 1 | Oco11G006830 |
| Poaceae | Oryza sativa | 2 | LOC_Os06g14640.1, LOC_Os06g14650.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_10G110300, gene-BS78_K035000 |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0201501, Pt_Chr0201502, Pt_Chr0404508, Pt_Chr0404509 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr11G018380 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G374000 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC7BG016420 |
| Poaceae | Triticum aestivum | 6 | TraesCS1A02G422300.1.cds1, TraesCS1D02G430400.1.cds1 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-50336, nbis-gene-56364 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g29463, Zma_g31703 |