Basic Information
Locus ID:
Pt_Chr0201479
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 38192076 | 38203783 | + | Pt_Chr0201479 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.28 | 164,781.88 Da | 50.20 | 80.73 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 909 | 1177 | 4.1E-15 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 870 | 1177 | 1.46E-35 | IPR011009 |
| SUPERFAMILY | SSF81383 | F-box domain | 37 | 92 | 1.06E-9 | IPR036047 |
| SUPERFAMILY | SSF52058 | L domain-like | 619 | 738 | 1.13E-15 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 1222 | 1267 | 1.7E-6 | IPR036047 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 974 | 1192 | 4.6E-25 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 861 | 972 | 8.0E-19 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 596 | 746 | 6.7E-23 | IPR032675 |
| SMART | SM00256 | fbox_2 | 1232 | 1273 | 1.3 | IPR001810 |
| SMART | SM00256 | fbox_2 | 42 | 83 | 0.0097 | IPR001810 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 897 | 1200 | 21.644114 | IPR000719 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 478 | 497 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G20850.1 | STRUBBELIG-receptor family 1. | 0 |
| RefSeq | XP_051195259.1 | protein STRUBBELIG-like [Lolium perenne] | 0 |
| Q06BH3 | Protein STRUBBELIG-RECEPTOR FAMILY 1 OS=Arabidopsis thaliana OX=3702 GN=SRF1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A453N883 | Protein kinase domain-containing protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 3 | AH07.321, BH07.417, CH03.4499 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0101050, gene-QOZ80_2BG0154450 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0555950.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_020170 |
| Poaceae | Oryza coarctata | 1 | Oco03G002060 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g04430.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G032300 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0201479, Pt_Chr0201528 |
| Poaceae | Thinopyrum elongatum | 1 | Tel6E01G233400 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC6AG013450, gene_TRIDC6BG018900 |
| Poaceae | Triticum aestivum | 3 | TraesCS6A02G103900.1, TraesCS6B02G133000.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb231730_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-33773 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g12164 |