Basic Information
Locus ID:
Pt_Chr0201425
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 36823176 | 36831365 | + | Pt_Chr0201425 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.16 | 31,255.40 Da | 50.49 | 101.40 | 0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 85 | 133 | 9.18333E-19 | - |
| Pfam | PF12906 | RING-variant domain | 85 | 132 | 1.6E-10 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 83 | 136 | 3.0E-14 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 79 | 137 | 1.9E-16 | IPR013083 |
| SMART | SM00744 | ringv_2 | 84 | 133 | 1.5E-15 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 77 | 139 | 19.786926 | IPR011016 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G50440.1 | RING/FYVE/PHD zinc finger superfamily protein. | 0 |
| RefSeq | XP_024317343.1 | uncharacterized protein LOC100827595 isoform X3 [Brachypodium distachyon] | 0 |
| TrEMBL | I1HWW5 | RING-CH-type domain-containing protein OS=Brachypodium distachyon OX=15368 GN=100827595 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology