Basic Information
Locus ID:
Pt_Chr0201423
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Leucine rich repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 36747108 | 36755891 | + | Pt_Chr0201423 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.42 | 216,130.98 Da | 41.00 | 105.51 | 0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13855 | Leucine rich repeat | 361 | 420 | 1.7E-6 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 1479 | 1538 | 1.4E-7 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 1090 | 1149 | 1.5E-8 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 520 | 578 | 2.0E-7 | IPR001611 |
| Pfam | PF00069 | Protein kinase domain | 1762 | 1840 | 9.6E-10 | IPR000719 |
| Pfam | PF13855 | Leucine rich repeat | 593 | 651 | 2.1E-9 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 1601 | 1659 | 6.0E-10 | IPR001611 |
| Pfam | PF00069 | Protein kinase domain | 759 | 837 | 1.3E-9 | IPR000719 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 36 | 75 | 2.8E-9 | IPR013210 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 997 | 1036 | 1.2E-9 | IPR013210 |
| SUPERFAMILY | SSF52047 | RNI-like | 1046 | 1392 | 3.37E-62 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 35 | 288 | 4.53E-52 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 739 | 964 | 1.43E-27 | IPR011009 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 1738 | 1967 | 2.4E-26 | IPR011009 |
| SUPERFAMILY | SSF52047 | RNI-like | 1312 | 1667 | 7.85E-61 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 298 | 660 | 3.61E-60 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 996 | 1175 | 2.2E-48 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 482 | 693 | 2.0E-61 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 199 | 275 | 1.6E-14 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 741 | 829 | 2.7E-23 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 1186 | 1397 | 3.0E-56 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 1398 | 1695 | 3.5E-79 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 1730 | 1833 | 3.3E-23 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1834 | 1972 | 2.0E-8 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 35 | 198 | 6.4E-45 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 830 | 969 | 5.1E-11 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 276 | 481 | 6.7E-46 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 224 | 248 | 20.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 638 | 663 | 300.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 1501 | 1524 | 99.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 1330 | 1353 | 230.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 175 | 197 | 140.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 1088 | 1112 | 5.7 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 1525 | 1549 | 0.043 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 127 | 150 | 92.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 517 | 541 | 4.5 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 1354 | 1378 | 140.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 565 | 588 | 110.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 383 | 407 | 240.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 1601 | 1621 | 110.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 1136 | 1158 | 72.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 614 | 637 | 95.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 151 | 174 | 210.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 1185 | 1209 | 150.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 1622 | 1646 | 44.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 1234 | 1258 | 39.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 1453 | 1477 | 380.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 1573 | 1596 | 120.0 | IPR003591 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 1600 | 1621 | 7.165205 | IPR001611 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 1624 | 1646 | 7.026593 | IPR001611 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1761 | 1980 | 10.082502 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 764 | 786 | - | IPR017441 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 1767 | 1789 | - | IPR017441 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G47570.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_048573011.1 | probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Triticum urartu] | 0 |
| C0LGP4 | Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana OX=3702 GN=At3g47570 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8R7Q7E8 | Protein kinase domain-containing protein OS=Triticum urartu OX=4572 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_000662, gene-QYE76_020051 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0201394, Pt_Chr0201423 |