Basic Information
Locus ID:
Pt_Chr0201414
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 36477989 | 36485911 | + | Pt_Chr0201414 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.16 | 44,369.83 Da | 42.04 | 86.79 | -0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 19 | 391 | 3.11E-29 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 157 | 392 | 2.7E-35 | IPR015943 |
| SMART | SM00320 | WD40_4 | 175 | 215 | 0.39 | IPR001680 |
| SMART | SM00320 | WD40_4 | 56 | 104 | 110.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 265 | 309 | 320.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 220 | 262 | 3.3 | IPR001680 |
| SMART | SM00320 | WD40_4 | 314 | 354 | 74.0 | IPR001680 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G63460.3 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_003562538.1 | protein transport protein SEC31 homolog B [Brachypodium distachyon] | 0 |
| Q4P2B6 | Protein transport protein SEC31 OS=Mycosarcoma maydis OX=5270 GN=SEC31 PE=3 SV=1 | 0 | |
| TrEMBL | A0A0E0G0P5 | WD_REPEATS_REGION domain-containing protein OS=Oryza nivara OX=4536 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Asteraceae | Flaveria trinervia | 1 | Ftri15G06539 |
| Poaceae | Echinochloa crus-galli | 1 | CH03.4557 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_020038 |
| Poaceae | Oryza coarctata | 1 | Oco03G001780 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g03990.1 |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0201384, Pt_Chr0201412, Pt_Chr0201414, Pt_Chr0305667 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-19408 |