Basic Information
Locus ID:
Pt_Chr0201412
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
transport protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 36434845 | 36439862 | + | Pt_Chr0201412 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.25 | 32,862.75 Da | 55.70 | 78.89 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 65 | 246 | 7.53E-24 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 46 | 251 | 8.6E-32 | IPR015943 |
| SMART | SM00320 | WD40_4 | 64 | 104 | 0.39 | IPR001680 |
| SMART | SM00320 | WD40_4 | 203 | 244 | 49.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 109 | 151 | 3.3 | IPR001680 |
| SMART | SM00320 | WD40_4 | 154 | 198 | 320.0 | IPR001680 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_042408152.1 | protein transport protein SEC31 homolog B-like isoform X1 [Zingiber officinale] | 0 |
| TrEMBL | A0A0A9U2W9 | WD_REPEATS_REGION domain-containing protein OS=Arundo donax OX=35708 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Asteraceae | Flaveria trinervia | 1 | Ftri15G06539 |
| Poaceae | Echinochloa crus-galli | 1 | CH03.4557 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_020038 |
| Poaceae | Oryza coarctata | 1 | Oco03G001780 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g03990.1 |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0201384, Pt_Chr0201412, Pt_Chr0201414, Pt_Chr0305667 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-19408 |