Basic Information
Locus ID:
Pt_Chr0201394
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Leucine rich repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 35891036 | 35905271 | + | Pt_Chr0201394 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.42 | 209,562.56 Da | 38.74 | 106.43 | 0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13855 | Leucine rich repeat | 534 | 592 | 7.2E-9 | IPR001611 |
| Pfam | PF00069 | Protein kinase domain | 700 | 778 | 1.8E-9 | IPR000719 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 935 | 974 | 1.2E-9 | IPR013210 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 17 | 56 | 8.1E-10 | IPR013210 |
| Pfam | PF00069 | Protein kinase domain | 1700 | 1778 | 9.6E-10 | IPR000719 |
| Pfam | PF13855 | Leucine rich repeat | 1028 | 1087 | 1.7E-8 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 461 | 519 | 1.3E-7 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 1417 | 1476 | 1.4E-7 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 291 | 350 | 1.7E-6 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 1539 | 1597 | 5.8E-10 | IPR001611 |
| SUPERFAMILY | SSF52058 | L domain-like | 16 | 280 | 1.31E-53 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 257 | 352 | 1.68E-13 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 948 | 1305 | 9.52E-62 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 359 | 628 | 1.25E-44 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 675 | 896 | 4.86E-27 | IPR011009 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 1676 | 1905 | 4.02E-26 | IPR011009 |
| SUPERFAMILY | SSF52047 | RNI-like | 1250 | 1607 | 2.04E-60 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 934 | 1113 | 7.2E-47 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 682 | 773 | 3.2E-23 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 225 | 435 | 3.3E-52 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1771 | 1908 | 1.7E-8 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 774 | 905 | 2.9E-11 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 180 | 224 | 7.8E-6 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 16 | 179 | 3.0E-45 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 1668 | 1770 | 2.0E-22 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 1336 | 1632 | 2.0E-80 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 436 | 634 | 4.5E-56 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 1125 | 1335 | 1.8E-56 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 313 | 337 | 240.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 1511 | 1534 | 200.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 132 | 155 | 210.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 1026 | 1050 | 5.7 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 1268 | 1291 | 140.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 1074 | 1096 | 72.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 1463 | 1487 | 0.043 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 1439 | 1462 | 99.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 1172 | 1196 | 39.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 1539 | 1559 | 110.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 458 | 482 | 4.5 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 1560 | 1584 | 44.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 156 | 178 | 140.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 1292 | 1316 | 140.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 108 | 131 | 92.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 579 | 604 | 300.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 506 | 529 | 110.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 1391 | 1415 | 380.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 1123 | 1147 | 130.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 555 | 578 | 230.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 205 | 232 | 51.0 | IPR003591 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 1562 | 1584 | 7.026593 | IPR001611 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 1538 | 1559 | 7.165205 | IPR001611 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1699 | 1918 | 9.842224 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 1705 | 1727 | - | IPR017441 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 705 | 727 | - | IPR017441 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G47570.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_048573011.1 | probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Triticum urartu] | 0 |
| C0LGP4 | Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana OX=3702 GN=At3g47570 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8R7Q7E8 | Protein kinase domain-containing protein OS=Triticum urartu OX=4572 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_000662, gene-QYE76_020051 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0201394, Pt_Chr0201423 |