Basic Information
Locus ID:
Pt_Chr0201128
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 28185255 | 28188494 | - | Pt_Chr0201128 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.81 | 113,495.77 Da | 36.13 | 99.49 | 0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 793 | 1065 | 2.95482E-96 | - |
| Pfam | PF00069 | Protein kinase domain | 788 | 1060 | 6.0E-42 | IPR000719 |
| Pfam | PF13855 | Leucine rich repeat | 563 | 619 | 7.9E-7 | IPR001611 |
| Pfam | PF00560 | Leucine Rich Repeat | 473 | 493 | 1.1 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 42 | 77 | 2.0E-4 | IPR013210 |
| SUPERFAMILY | SSF52058 | L domain-like | 66 | 266 | 5.67E-33 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 203 | 522 | 2.75E-58 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 553 | 671 | 4.76E-24 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 770 | 1063 | 1.91E-72 | IPR011009 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 43 | 199 | 7.5E-28 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 200 | 301 | 7.5E-24 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 864 | 1078 | 3.8E-55 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 302 | 684 | 1.2E-100 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 762 | 863 | 2.8E-28 | - |
| SMART | SM00369 | LRR_typ_2 | 471 | 495 | 77.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 103 | 127 | 1.4 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 606 | 630 | 3.4 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 274 | 297 | 8.3 | IPR003591 |
| SMART | SM00220 | serkin_6 | 787 | 1066 | 1.3E-37 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 226 | 250 | 170.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 787 | 1066 | 38.364635 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 793 | 815 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 911 | 923 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G02220.1 | phytosulfokin receptor 1. Encodes a protein interacting with phytosulfokine, a five amino acid sulfated peptide (YIYTQ). | 0 |
| RefSeq | XP_047079014.1 | phytosulfokine receptor 1-like [Lolium rigidum] | 0 |
| Q9ZVR7 | Phytosulfokine receptor 1 OS=Arabidopsis thaliana OX=3702 GN=PSKR1 PE=1 SV=4 | 0 | |
| TrEMBL | F2CXU7 | Predicted protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0099290, gene-QOZ80_2BG0152720 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0546030.1.CDS1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_019570, gene-QYE76_019571 |
| Poaceae | Oryza coarctata | 2 | Oco03G000770, Oco04G000710 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g02490.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G012100 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0201128 |
| Poaceae | Thinopyrum elongatum | 1 | Tel6E01G117700 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC6AG005390, gene_TRIDC6BG007810 |
| Poaceae | Triticum aestivum | 3 | TraesCS6A02G044700.1.cds1, TraesCS6B02G061000.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb229960_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-52092 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g12066 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g21260 |