Basic Information
Locus ID:
Pt_Chr0200973
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Kelch motif
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 24225513 | 24231993 | + | Pt_Chr0200973 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.53 | 39,045.61 Da | 37.33 | 87.35 | -0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13418 | Galactose oxidase, central domain | 109 | 146 | 5.5E-6 | - |
| Pfam | PF00646 | F-box domain | 11 | 49 | 5.3E-6 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 6 | 77 | 6.54E-8 | IPR036047 |
| SUPERFAMILY | SSF117281 | Kelch motif | 63 | 307 | 1.27E-34 | IPR015915 |
| Gene3D | G3DSA:2.120.10.80 | - | 51 | 320 | 7.4E-26 | IPR015915 |
| SMART | SM00612 | kelc_smart | 111 | 158 | 1.1E-4 | IPR006652 |
| SMART | SM00256 | fbox_2 | 14 | 53 | 9.8E-4 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G61350.1 | SKP1 interacting partner 4. Encodes an SKP1 interacting partner (SKIP4). | 0 |
| RefSeq | XP_051195701.1 | F-box/kelch-repeat protein SKIP4-like [Lolium perenne] | 0 |
| Q9M2C9 | F-box/kelch-repeat protein SKIP4 OS=Arabidopsis thaliana OX=3702 GN=SKIP4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A453MUZ7 | F-box domain-containing protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg29349 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_1g004770 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg44136, Sbi_jg49389 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg5905 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00000428 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl11100, Sgl16503 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000013965, gene:ENSEOMG00000034740 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1AG0002770, CQ.Regalona.r1.2BG0024730 |
| Apiaceae | Apium graveolens | 1 | Ag5G01079 |
| Arecaceae | Cocos nucifera | 2 | COCNU_08G010370, COCNU_09G007830 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103699234 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_10.1531.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri11G19817 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G61350.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10006061m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g02050.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB06g053240.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq05G0111 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl05G0111 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno02g09490 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate08g01350, gene.Thate08g01360 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-9506 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG08.187 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00030879, Pov_00032013 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G11059 |
| Poaceae | Echinochloa crus-galli | 3 | AH07.118, BH07.98, CH03.4724 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0513270, gene-QOZ80_6BG0465090 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0544420.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_019519 |
| Poaceae | Oryza coarctata | 2 | Oco03G000650, Oco04G000600 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g02350.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_10G012900 |
| Poaceae | Puccinellia tenuiflora | 6 | Pt_Chr0200970, Pt_Chr0200973, Pt_Chr0200975, Pt_Chr0200976 ... |
| Poaceae | Sporobolus alterniflorus | 3 | Chr11G020450, Chr14G003590, Chr21G002890 |
| Poaceae | Thinopyrum elongatum | 1 | Tel6E01G098500 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC6AG004530, gene_TRIDC6BG006390 |
| Poaceae | Triticum aestivum | 3 | TraesCS6A02G037900.1, TraesCS6B02G052900.2 ... |
| Poaceae | Zea mays | 1 | Zm00001eb229830_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-35028 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g31561 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG04.2289, evm.TU.LG06.21 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g13990 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_5_RagTag.269 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-10848 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-19108 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-10527 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000006l.175 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00013749 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-9198 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-7031 |
| Salicaceae | Populus euphratica | 1 | populus_peu27708 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132645587 |
| Solanaceae | Solanum chilense | 1 | SOLCI002115700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107009737 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.29092_chr11_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC03G2444 |
| Zosteraceae | Zostera marina | 1 | Zosma04g23120.v3.1 |