Basic Information
Locus ID:
Pt_Chr0200914
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 22166131 | 22167444 | + | Pt_Chr0200914 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.02 | 47,170.12 Da | 49.06 | 104.71 | 0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 15 | 62 | 6.17285E-21 | - |
| Pfam | PF04564 | U-box domain | 11 | 89 | 4.5E-20 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 7 | 94 | 4.28E-26 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 218 | 417 | 2.66E-14 | IPR016024 |
| Gene3D | G3DSA:1.25.10.10 | - | 105 | 419 | 4.6E-13 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 2 | 94 | 2.5E-27 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 14 | 85 | 1.5E-26 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 10 | 92 | 32.270878 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G35930.1 | plant U-box 23. Encodes a cytoplasmically localized U-box domain containing E3 ubiquitin ligase that is involved in the response to water stress and acts as a negative regulator of PAMP-triggered immunity. | 0 |
| RefSeq | XP_051217028.1 | E3 ubiquitin-protein ligase PUB23-like isoform X1 [Lolium perenne] | 0 |
| Q84TG3 | E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana OX=3702 GN=PUB23 PE=1 SV=1 | 0 | |
| TrEMBL | F2DFQ0 | RING-type E3 ubiquitin transferase OS=Hordeum vulgare subsp. vulgare OX=112509 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology