halophFGD

Basic Information

Locus ID: Pt_Chr0200848

Species & Taxonomic ID: Puccinellia tenuiflora & 240906

Genome Assembly: GCA_012064385.1

Description:

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
Chr02	20648587	20650967	+	Pt_Chr0200848

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
10.32	67,357.01 Da	52.05	70.56	-0.67

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF01498	Transposase	283	334	1.1E-7	IPR002492
Gene3D	G3DSA:3.30.420.10	-	307	575	9.1E-36	IPR036397
MobiDBLite	mobidb-lite	consensus disorder prediction	170	194	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	170	185	-	-

Gene Ontology

Biological Process:

GO:0006313 (DNA transposition) GO:0015074 (DNA integration)

Molecular Function:

GO:0003676 (nucleic acid binding) GO:0003677 (DNA binding)

Best hit

Source	Best Hit ID	Description	E-value
RefSeq	XP_051222017.1	uncharacterized protein LOC127340287 [Lolium perenne]	0
TrEMBL	A0A8I6XRQ9	HTH_Tnp_Tc3_2 domain-containing protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=4 SV=1	0

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Amaranthaceae	Atriplex hortensis	6	Ah006213, Ah010759, Ah019887, Ah031043, Ah032641, Ah033162
Amaranthaceae	Beta vulgaris	2	BVRB_1g014360, BVRB_7g166780
Amaranthaceae	Salicornia bigelovii	7	Sbi_jg19944, Sbi_jg25545, Sbi_jg44952, Sbi_jg48193 ... Sbi_jg51365, Sbi_jg53934, Sbi_jg7308
Amaranthaceae	Salicornia europaea	2	Seu_jg10539, Seu_jg27544
Amaranthaceae	Suaeda aralocaspica	8	GOSA_00003954, GOSA_00008894, GOSA_00013904, GOSA_00018345 ... GOSA_00019430, GOSA_00023386, GOSA_00024645, GOSA_00027346
Amaranthaceae	Suaeda glauca	21	Sgl00164, Sgl02767, Sgl05214, Sgl17655, Sgl22329, Sgl23295 ... Sgl23450, Sgl24101, Sgl33028, Sgl40822, Sgl53976, Sgl55471, Sgl59310, Sgl59446, Sgl60984, Sgl62170, Sgl66731, Sgl75196, Sgl77769, Sgl78959, Sgl82722
Amaranthaceae	Chenopodium album	5	gene:ENSEOMG00000002058, gene:ENSEOMG00000009252 ... gene:ENSEOMG00000020227, gene:ENSEOMG00000044078, gene:ENSEOMG00000049804
Amaranthaceae	Chenopodium quinoa	2	CQ.Regalona.r1.4BG0017180, CQ.Regalona.r1.7BG0014940
Anacardiaceae	Pistacia vera	4	pistato.v30065960, pistato.v30184240, pistato.v30184650 ... pistato.v30196580
Apiaceae	Apium graveolens	1	Ag7G00029
Brassicaceae	Brassica nigra	2	BniB02g000050.2N, BniB05g035450.2N
Plantaginaceae	Plantago ovata	54	Pov_00004003, Pov_00004711, Pov_00004712, Pov_00004713 ... Pov_00006290, Pov_00007084, Pov_00007713, Pov_00008217, Pov_00008218, Pov_00008219, Pov_00008705, Pov_00008708, Pov_00008709, Pov_00009252, Pov_00009462, Pov_00009682, Pov_00010261, Pov_00010262, Pov_00010284, Pov_00011082, Pov_00011616, Pov_00011952, Pov_00014351, Pov_00015822, Pov_00016625, Pov_00017130, Pov_00017151, Pov_00017371, Pov_00017500, Pov_00017501, Pov_00018291, Pov_00018292, Pov_00018873, Pov_00019076, Pov_00019111, Pov_00019572, Pov_00019604, Pov_00019605, Pov_00024169, Pov_00026405, Pov_00028150, Pov_00028151, Pov_00028152, Pov_00029306, Pov_00029864, Pov_00029973, Pov_00031416, Pov_00031874, Pov_00034659, Pov_00035014, Pov_00035443, Pov_00036356, Pov_00036627, Pov_00038666
Plumbaginaceae	Limonium bicolor	5	Lb0G37883, Lb1G07087, Lb3G18280, Lb3G19762, Lb5G26493
Poaceae	Echinochloa crus-galli	43	AH01.2638, AH01.3064, AH02.2640, AH02.2885, AH02.4139 ... AH03.1568, AH03.2233, AH03.2355, AH03.2588, AH04.480, AH05.2750, AH05.3408, AH05.629, AH07.1523, AH07.3118, AH07.3519, AH07.3522, BH01.1215, BH01.3692, BH01.4943, BH02.1894, BH02.786, BH04.1370, BH04.2108, BH04.469, BH05.4183, BH06.1700, BH07.1372, BH07.1476, BH08.1240, BH08.197, BH08.2513, BH09.1437, CH02.2412, CH02.3580, CH02.773, CH03.1951, CH03.268, CH04.1222, CH05.3065, CH05.3152, CH05.906, CH07.2545
Poaceae	Eleusine coracana subsp. coracana	2	gene-QOZ80_5AG0397530, gene-QOZ80_6BG0487580
Poaceae	Hordeum vulgare	32	HORVU.MOREX.r3.1HG0023760.1, HORVU.MOREX.r3.2HG0150520.1 ... HORVU.MOREX.r3.1HG0034760.1.CDS1, HORVU.MOREX.r3.1HG0048180.1.CDS1, HORVU.MOREX.r3.1HG0068760.1.CDS1, HORVU.MOREX.r3.2HG0106270.1.CDS1, HORVU.MOREX.r3.2HG0136880.1.CDS1, HORVU.MOREX.r3.2HG0154210.1, HORVU.MOREX.r3.2HG0162800.1.CDS1, HORVU.MOREX.r3.2HG0175150.1.CDS1, HORVU.MOREX.r3.2HG0209420.1, HORVU.MOREX.r3.3HG0256350.1.CDS1, HORVU.MOREX.r3.3HG0259980.1, HORVU.MOREX.r3.3HG0314930.1.CDS1, HORVU.MOREX.r3.4HG0337910.1, HORVU.MOREX.r3.4HG0347350.1.CDS1, HORVU.MOREX.r3.4HG0356950.1.CDS1, HORVU.MOREX.r3.4HG0392290.1, HORVU.MOREX.r3.4HG0396050.1, HORVU.MOREX.r3.4HG0397470.1.CDS1, HORVU.MOREX.r3.5HG0447660.1.CDS1, HORVU.MOREX.r3.5HG0511200.1, HORVU.MOREX.r3.6HG0566260.1.CDS1, HORVU.MOREX.r3.6HG0578500.1.CDS1, HORVU.MOREX.r3.6HG0599650.1, HORVU.MOREX.r3.6HG0617440.1, HORVU.MOREX.r3.7HG0672440.1, HORVU.MOREX.r3.7HG0672910.1.CDS1, HORVU.MOREX.r3.7HG0696580.1.CDS1, HORVU.MOREX.r3.7HG0715880.1, HORVU.MOREX.r3.7HG0723070.1, HORVU.MOREX.r3.7HG0735980.1
Poaceae	Lolium multiflorum	10	gene-QYE76_003764, gene-QYE76_009617, gene-QYE76_024556 ... gene-QYE76_031867, gene-QYE76_034788, gene-QYE76_042154, gene-QYE76_052949, gene-QYE76_068735, gene-QYE76_069014, gene-QYE76_069278
Poaceae	Oryza coarctata	1	Oco24G004250
Poaceae	Paspalum vaginatum	15	gene-BS78_02G030300, gene-BS78_02G055200, gene-BS78_K075900 ... gene-BS78_03G128000, gene-BS78_03G188400, gene-BS78_03G254400, gene-BS78_03G406100, gene-BS78_04G062700, gene-BS78_04G126800, gene-BS78_06G019800, gene-BS78_06G093700, gene-BS78_09G002700, gene-BS78_09G084000, gene-BS78_09G228800, gene-BS78_10G142600
Poaceae	Puccinellia tenuiflora	9	Pt_Chr0106934, Pt_Chr0200848, Pt_Chr0201080, Pt_Chr0302395 ... Pt_Chr0403953, Pt_Chr0501066, Pt_Chr0501820, Pt_Chr0501882, Pt_Chr0505613
Poaceae	Sporobolus alterniflorus	29	Chr01G001760, Chr01G022260, Chr01G023010, Chr02G016090 ... Chr02G021560, Chr02G024940, Chr02G024960, Chr06G025420, Chr06G025890, Chr07G014790, Chr07G023100, Chr09G015980, Chr09G020310, Chr09G020710, Chr10G002450, Chr10G002460, Chr10G010590, Chr11G001520, Chr11G013920, Chr13G019020, Chr13G019030, Chr17G005800, Chr21G013170, Chr22G017190, Chr25G004890, Chr26G008470, Chr27G003110, Chr28G005960, Chr29G004450
Poaceae	Triticum dicoccoides	7	gene_TRIDC1AG023820, gene_TRIDC1AG044510 ... gene_TRIDC1BG027560, gene_TRIDC2AG018450, gene_TRIDC5AG052350, gene_TRIDC6AG054590, gene_TRIDC7BG072050
Poaceae	Zoysia japonica	2	nbis-gene-41619, nbis-gene-46116
Poaceae	Zoysia macrostachya	3	Zma_g14123, Zma_g18700, Zma_g23636
Solanaceae	Lycium barbarum	4	gene-LOC132636239, gene-LOC132639179, gene-LOC132639362 ... gene-LOC132642464