Basic Information
Locus ID:
Pt_Chr0200846
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Short Name:
CMT1
Description:
C-5 cytosine-specific DNA methylase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 20579348 | 20586140 | + | Pt_Chr0200846 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.76 | 104,687.01 Da | 41.50 | 73.24 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18635 | CD_CMT3_like | 499 | 553 | 7.84744E-28 | - |
| Pfam | PF00145 | C-5 cytosine-specific DNA methylase | 564 | 888 | 8.4E-33 | IPR001525 |
| Pfam | PF01426 | BAH domain | 229 | 349 | 1.7E-11 | IPR001025 |
| Pfam | PF00385 | Chromo (CHRromatin Organisation MOdifier) domain | 499 | 554 | 6.8E-11 | IPR023780 |
| SUPERFAMILY | SSF54160 | Chromo domain-like | 493 | 554 | 2.57E-11 | IPR016197 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 393 | 889 | 2.79E-74 | IPR029063 |
| Gene3D | G3DSA:3.90.120.10 | DNA Methylase, subunit A, domain 2 | 760 | 856 | 7.8E-35 | - |
| Gene3D | G3DSA:2.30.30.490 | - | 167 | 336 | 6.0E-47 | IPR043151 |
| Gene3D | G3DSA:3.90.120.10 | DNA Methylase, subunit A, domain 2 | 722 | 759 | 1.4E-8 | - |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 337 | 721 | 2.3E-162 | - |
| SMART | SM00439 | BAH_4 | 227 | 351 | 1.1E-16 | IPR001025 |
| SMART | SM00298 | chromo_7 | 498 | 557 | 2.3E-5 | IPR000953 |
| ProSiteProfiles | PS51679 | C-5 cytosine-specific DNA methylase (Dnmt) domain profile. | 393 | 897 | 43.395706 | IPR001525 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 227 | 351 | 17.198921 | IPR001025 |
| ProSiteProfiles | PS50013 | Chromo and chromo shadow domain profile. | 499 | 552 | 12.086901 | IPR000953 |
| ProSitePatterns | PS00094 | C-5 cytosine-specific DNA methylases active site. | 569 | 581 | - | IPR018117 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 394 | 410 | 1.1E-10 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 612 | 626 | 1.1E-10 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 658 | 671 | 1.1E-10 | IPR001525 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 58 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 108 | 122 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 475 | 495 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 97 | 182 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 151 | 182 | - | - |
| Coils | Coil | Coil | 16 | 43 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G69770.1 | chromomethylase 3. Encodes a chromomethylase involved in methylating cytosine residues at non-CG sites. Involved in preferentially methylating transposon-related sequences, reducing their mobility. CMT3 interacts with an Arabidopsis homologue of HP1 (heterochromatin protein 1), which in turn interacts with methylated histones. Involved in gene silencing. | 0 |
| RefSeq | XP_051198652.1 | DNA (cytosine-5)-methyltransferase CMT1-like isoform X2 [Lolium perenne] | 0 |
| A0A0P0VUY4 | DNA (cytosine-5)-methyltransferase CMT1 OS=Oryza sativa subsp. japonica OX=39947 GN=CMT1 PE=3 SV=1 | 0 | |
| TrEMBL | A0A2K2DU51 | DNA (cytosine-5-)-methyltransferase OS=Brachypodium distachyon OX=15368 GN=BRADI_1g68985v3 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology