Basic Information
Locus ID:
Pt_Chr0200838
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Wall-associated receptor kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 20486580 | 20492140 | + | Pt_Chr0200838 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.67 | 98,204.90 Da | 41.48 | 86.27 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00054 | EGF_CA | 461 | 488 | 1.43563E-6 | - |
| Pfam | PF13947 | Wall-associated receptor kinase galacturonan-binding | 310 | 367 | 9.9E-10 | IPR025287 |
| Pfam | PF00069 | Protein kinase domain | 586 | 834 | 5.5E-37 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 570 | 843 | 2.19E-65 | IPR011009 |
| SUPERFAMILY | SSF57184 | Growth factor receptor domain | 417 | 502 | 1.73E-5 | IPR009030 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 560 | 652 | 1.7E-19 | - |
| Gene3D | G3DSA:2.10.25.10 | Laminin | 420 | 495 | 2.9E-10 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 653 | 844 | 1.5E-44 | - |
| SMART | SM00179 | egfca_6 | 461 | 501 | 1.0E-4 | IPR001881 |
| SMART | SM00181 | egf_5 | 409 | 460 | 39.0 | IPR000742 |
| SMART | SM00220 | serkin_6 | 585 | 840 | 2.0E-25 | IPR000719 |
| SMART | SM00181 | egf_5 | 249 | 296 | 18.0 | IPR000742 |
| SMART | SM00181 | egf_5 | 464 | 501 | 8.9 | IPR000742 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 585 | 840 | 30.60507 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 697 | 709 | - | IPR008271 |
| ProSitePatterns | PS01187 | Calcium-binding EGF-like domain signature. | 461 | 484 | - | IPR018097 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G21230.1 | wall associated kinase 5. encodes a wall-associated kinase | 0 |
| RefSeq | XP_052151449.1 | wall-associated receptor kinase-like 8 isoform X1 [Oryza glaberrima] | 0 |
| Q9LMN7 | Wall-associated receptor kinase 5 OS=Arabidopsis thaliana OX=3702 GN=WAK5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0D3FUQ0 | Protein kinase domain-containing protein OS=Oryza barthii OX=65489 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 3 | AH09.693, BH09.711, CH09.770 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_4AG0320520, gene-QOZ80_4BG0357240 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.3HG0219240.1, HORVU.MOREX.r3.3HG0219270.1 |
| Poaceae | Oryza coarctata | 1 | Oco07G003480 |
| Poaceae | Oryza sativa | 15 | LOC_Os04g18590.1, LOC_Os04g20680.1, LOC_Os04g29770.1 ... |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0200838 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr0G006600, Chr25G013120, Chr30G012830, Chr30G012870 |
| Poaceae | Thinopyrum elongatum | 2 | Tel3E01G012600, Tel6E01G607000 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC3AG002230, gene_TRIDC6AG051200 ... |
| Poaceae | Triticum aestivum | 4 | TraesCS3A02G006900.1, TraesCS3D02G003900.1 ... |
| Poaceae | Zoysia japonica | 3 | nbis-gene-44989, nbis-gene-49124, nbis-gene-56965 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g19503, Zma_g19505, Zma_g19511 |