Basic Information
Locus ID:
Pt_Chr0200552
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Belongs to the eukaryotic initiation factor 4E family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 12157641 | 12160837 | - | Pt_Chr0200552 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.93 | 42,169.28 Da | 34.59 | 67.98 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03478 | Protein of unknown function (DUF295) | 271 | 312 | 1.1E-9 | IPR005174 |
| Pfam | PF00646 | F-box domain | 20 | 62 | 5.2E-4 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 13 | 57 | 1.42E-5 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 20 | 60 | 4.7E-5 | - |
| SMART | SM00256 | fbox_2 | 24 | 65 | 0.0065 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_020167401.1 | uncharacterized protein LOC109752901 [Aegilops tauschii subsp. strangulata] | 0 |
| TrEMBL | N1QZF1 | Uncharacterized protein OS=Aegilops tauschii OX=37682 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Hordeum vulgare | 6 | HORVU.MOREX.r3.2HG0105960.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 23 | gene-QYE76_005955, gene-QYE76_007209, gene-QYE76_007223 ... |
| Poaceae | Oryza coarctata | 1 | Oco01G030920 |
| Poaceae | Puccinellia tenuiflora | 29 | Pt_Chr0106145, Pt_Chr0106146, Pt_Chr0106147, Pt_Chr0106148 ... |
| Poaceae | Thinopyrum elongatum | 5 | Tel2E01G714100, Tel3E01G083700, Tel3E01G849800 ... |
| Poaceae | Triticum dicoccoides | 16 | gene_TRIDC2AG006540, gene_TRIDC2BG007550 ... |
| Poaceae | Triticum aestivum | 22 | TraesCS2A02G419700.1.cds1, TraesCS2B02G438800.1.cds1 ... |