Basic Information
Locus ID:
Pt_Chr0200534
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 11954602 | 11956593 | + | Pt_Chr0200534 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.17 | 63,590.72 Da | 29.22 | 86.85 | 0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02005 | TPP_PDC_IPDC | 379 | 576 | 5.65754E-83 | - |
| CDD | cd07038 | TPP_PYR_PDC_IPDC_like | 19 | 181 | 8.03598E-88 | - |
| Pfam | PF00205 | Thiamine pyrophosphate enzyme, central domain | 214 | 328 | 1.7E-19 | IPR012000 |
| Pfam | PF02776 | Thiamine pyrophosphate enzyme, N-terminal TPP binding domain | 16 | 186 | 2.6E-36 | IPR012001 |
| Pfam | PF02775 | Thiamine pyrophosphate enzyme, C-terminal TPP binding domain | 424 | 563 | 7.5E-13 | IPR011766 |
| SUPERFAMILY | SSF52518 | Thiamin diphosphate-binding fold (THDP-binding) | 379 | 588 | 2.68E-36 | IPR029061 |
| SUPERFAMILY | SSF52467 | DHS-like NAD/FAD-binding domain | 203 | 356 | 5.38E-30 | IPR029035 |
| SUPERFAMILY | SSF52518 | Thiamin diphosphate-binding fold (THDP-binding) | 16 | 193 | 3.22E-42 | IPR029061 |
| Gene3D | G3DSA:3.40.50.1220 | - | 204 | 366 | 1.3E-40 | - |
| Gene3D | G3DSA:3.40.50.970 | - | 12 | 190 | 9.6E-59 | - |
| Gene3D | G3DSA:3.40.50.970 | - | 372 | 578 | 7.7E-53 | - |
| PIRSF | PIRSF036565 | Pyruvt_ip_decrb | 10 | 588 | 5.5E-203 | IPR012110 |
Gene Ontology
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G33070.1 | Thiamine pyrophosphate dependent pyruvate decarboxylase family protein. | 0 |
| RefSeq | XP_051213461.1 | pyruvate decarboxylase 2-like isoform X2 [Lolium perenne] | 0 |
| A2XFI3 | Pyruvate decarboxylase 2 OS=Oryza sativa subsp. indica OX=39946 GN=PDC2 PE=2 SV=2 | 0 | |
| TrEMBL | F2E9S9 | pyruvate decarboxylase OS=Hordeum vulgare subsp. vulgare OX=112509 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology