Basic Information
Locus ID:
Pt_Chr0200527
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Domain Homologous to E6-AP Carboxyl Terminus with
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 11832965 | 11842357 | - | Pt_Chr0200527 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.53 | 199,915.36 Da | 51.04 | 85.92 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00078 | HECTc | 1418 | 1850 | 1.74037E-118 | IPR000569 |
| Pfam | PF00632 | HECT-domain (ubiquitin-transferase) | 1515 | 1855 | 2.3E-79 | IPR000569 |
| SUPERFAMILY | SSF56204 | Hect, E3 ligase catalytic domain | 1410 | 1848 | 1.15E-91 | IPR035983 |
| SUPERFAMILY | SSF48371 | ARM repeat | 139 | 617 | 1.58E-37 | IPR016024 |
| Gene3D | G3DSA:3.90.1750.10 | Hect, E3 ligase catalytic domains | 1358 | 1612 | 9.6E-41 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 143 | 622 | 1.3E-47 | IPR011989 |
| Gene3D | G3DSA:3.30.2410.10 | Hect, E3 ligase catalytic domain | 1726 | 1853 | 9.7E-31 | - |
| SMART | SM00185 | arm_5 | 310 | 348 | 9.9 | IPR000225 |
| SMART | SM00185 | arm_5 | 227 | 268 | 60.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 171 | 225 | 16.0 | IPR000225 |
| SMART | SM00119 | hect_3 | 1432 | 1855 | 4.6E-80 | IPR000569 |
| ProSiteProfiles | PS50237 | HECT domain profile. | 1458 | 1855 | 54.382256 | IPR000569 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 620 | 656 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 937 | 979 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 8 | 24 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 478 | 492 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1009 | 1043 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 87 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 620 | 634 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1089 | 1108 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 34 | 48 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 937 | 1047 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 477 | 502 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G38600.1 | HEAT repeat ;HECT-domain (ubiquitin-transferase). encodes a member of HECT ubiquitin protein ligase family that is involved in trichome cell morphogenesis. Mutants in this gene exhibit supernumerary trichome branches and increased DNA content. | 0 |
| RefSeq | XP_047080766.1 | E3 ubiquitin-protein ligase UPL3-like [Lolium rigidum] | 0 |
| Q6WWW4 | E3 ubiquitin-protein ligase UPL3 OS=Arabidopsis thaliana OX=3702 GN=UPL3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6QB19 | HECT-type E3 ubiquitin transferase OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology