Basic Information
Locus ID:
Pt_Chr0200524
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Chromo (CHRromatin Organisation MOdifier) domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 11791649 | 11798173 | + | Pt_Chr0200524 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.98 | 60,098.69 Da | 39.34 | 72.68 | -0.59 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18635 | CD_CMT3_like | 413 | 467 | 7.33235E-22 | - |
| Pfam | PF00145 | C-5 cytosine-specific DNA methylase | 478 | 533 | 1.2E-5 | IPR001525 |
| Pfam | PF00385 | Chromo (CHRromatin Organisation MOdifier) domain | 430 | 467 | 1.0E-7 | IPR023780 |
| Pfam | PF01426 | BAH domain | 175 | 291 | 6.9E-15 | IPR001025 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 318 | 533 | 2.52E-25 | IPR029063 |
| SUPERFAMILY | SSF54160 | Chromo domain-like | 430 | 475 | 5.5E-11 | IPR016197 |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 279 | 533 | 1.1E-104 | - |
| Gene3D | G3DSA:2.30.30.490 | - | 85 | 278 | 1.2E-43 | IPR043151 |
| SMART | SM00439 | BAH_4 | 173 | 293 | 2.3E-15 | IPR001025 |
| ProSiteProfiles | PS50013 | Chromo and chromo shadow domain profile. | 414 | 468 | 9.571001 | IPR000953 |
| ProSiteProfiles | PS51679 | C-5 cytosine-specific DNA methylase (Dnmt) domain profile. | 317 | 533 | 22.710636 | IPR001525 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 173 | 293 | 19.45009 | IPR001025 |
| ProSitePatterns | PS00094 | C-5 cytosine-specific DNA methylases active site. | 482 | 494 | - | IPR018117 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 525 | 533 | 4.4E-6 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 318 | 334 | 4.4E-6 | IPR001525 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 46 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 85 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G80740.1 | chromomethylase 1. ecotype Kl-0 chromomethylase (CMT1). A plant line expressing an RNAi construct directed against DMT4 has reduced agrobacterium-mediated tumor formation. | 0 |
| RefSeq | XP_020187762.1 | DNA (cytosine-5)-methyltransferase CMT3 isoform X1 [Aegilops tauschii subsp. strangulata] | 0 |
| Q9AXT8 | DNA (cytosine-5)-methyltransferase 1 OS=Zea mays OX=4577 GN=MET2A PE=1 SV=1 | 0 | |
| TrEMBL | A0A453MQT4 | DNA (cytosine-5-)-methyltransferase OS=Aegilops tauschii subsp. strangulata OX=200361 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology