Basic Information
Locus ID:
Pt_Chr0200523
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Chromo (CHRromatin Organisation MOdifier) domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 11659985 | 11667647 | - | Pt_Chr0200523 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.86 | 60,879.57 Da | 37.33 | 73.98 | -0.53 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18635 | CD_CMT3_like | 410 | 464 | 6.3562E-22 | - |
| Pfam | PF00145 | C-5 cytosine-specific DNA methylase | 473 | 537 | 2.3E-8 | IPR001525 |
| Pfam | PF00385 | Chromo (CHRromatin Organisation MOdifier) domain | 427 | 464 | 1.1E-7 | IPR023780 |
| Pfam | PF01426 | BAH domain | 172 | 288 | 2.4E-14 | IPR001025 |
| SUPERFAMILY | SSF54160 | Chromo domain-like | 427 | 473 | 4.76E-11 | IPR016197 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 315 | 536 | 2.72E-28 | IPR029063 |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 276 | 542 | 1.3E-111 | - |
| Gene3D | G3DSA:2.30.30.490 | - | 82 | 275 | 6.0E-43 | IPR043151 |
| SMART | SM00439 | BAH_4 | 170 | 290 | 2.5E-14 | IPR001025 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 170 | 290 | 19.336107 | IPR001025 |
| ProSiteProfiles | PS51679 | C-5 cytosine-specific DNA methylase (Dnmt) domain profile. | 314 | 542 | 23.570595 | IPR001525 |
| ProSiteProfiles | PS50013 | Chromo and chromo shadow domain profile. | 411 | 465 | 9.571001 | IPR000953 |
| ProSitePatterns | PS00094 | C-5 cytosine-specific DNA methylases active site. | 479 | 491 | - | IPR018117 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 315 | 331 | 2.5E-7 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 522 | 536 | 2.5E-7 | IPR001525 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 9 | 43 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 82 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G80740.1 | chromomethylase 1. ecotype Kl-0 chromomethylase (CMT1). A plant line expressing an RNAi construct directed against DMT4 has reduced agrobacterium-mediated tumor formation. | 0 |
| RefSeq | XP_020187762.1 | DNA (cytosine-5)-methyltransferase CMT3 isoform X1 [Aegilops tauschii subsp. strangulata] | 0 |
| C0SQ89 | DNA (cytosine-5)-methyltransferase CMT3 OS=Oryza sativa subsp. japonica OX=39947 GN=CMT3 PE=2 SV=1 | 0 | |
| TrEMBL | A0A453MQT4 | DNA (cytosine-5-)-methyltransferase OS=Aegilops tauschii subsp. strangulata OX=200361 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology