Basic Information
Locus ID:
Pt_Chr0200522
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Cytosine-specific methyltransferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 11634359 | 11641652 | - | Pt_Chr0200522 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.21 | 90,719.14 Da | 38.71 | 74.99 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18635 | CD_CMT3_like | 452 | 506 | 1.82112E-22 | - |
| Pfam | PF01426 | BAH domain | 214 | 330 | 5.4E-16 | IPR001025 |
| Pfam | PF00145 | C-5 cytosine-specific DNA methylase | 676 | 757 | 5.9E-14 | IPR001525 |
| Pfam | PF00385 | Chromo (CHRromatin Organisation MOdifier) domain | 467 | 506 | 4.0E-7 | IPR023780 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 357 | 757 | 1.46E-45 | IPR029063 |
| SUPERFAMILY | SSF54160 | Chromo domain-like | 436 | 514 | 2.43E-11 | IPR016197 |
| Gene3D | G3DSA:2.30.30.490 | - | 113 | 317 | 1.1E-43 | IPR043151 |
| Gene3D | G3DSA:3.90.120.10 | DNA Methylase, subunit A, domain 2 | 595 | 664 | 1.5E-26 | - |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 555 | 594 | 1.5E-26 | - |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 724 | 775 | 6.9E-55 | - |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 318 | 554 | 3.6E-95 | - |
| Gene3D | G3DSA:3.90.120.10 | DNA Methylase, subunit A, domain 2 | 665 | 723 | 6.9E-55 | - |
| SMART | SM00439 | BAH_4 | 212 | 332 | 1.8E-18 | IPR001025 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 212 | 332 | 20.26222 | IPR001025 |
| ProSiteProfiles | PS51679 | C-5 cytosine-specific DNA methylase (Dnmt) domain profile. | 356 | 764 | 28.776415 | IPR001525 |
| ProSiteProfiles | PS50013 | Chromo and chromo shadow domain profile. | 453 | 507 | 9.824401 | IPR000953 |
| ProSitePatterns | PS00094 | C-5 cytosine-specific DNA methylases active site. | 521 | 533 | - | IPR018117 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 119 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 72 | 94 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 19 | 35 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G69770.1 | chromomethylase 3. Encodes a chromomethylase involved in methylating cytosine residues at non-CG sites. Involved in preferentially methylating transposon-related sequences, reducing their mobility. CMT3 interacts with an Arabidopsis homologue of HP1 (heterochromatin protein 1), which in turn interacts with methylated histones. Involved in gene silencing. | 0 |
| RefSeq | XP_020187762.1 | DNA (cytosine-5)-methyltransferase CMT3 isoform X1 [Aegilops tauschii subsp. strangulata] | 0 |
| Q9AXT8 | DNA (cytosine-5)-methyltransferase 1 OS=Zea mays OX=4577 GN=MET2A PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6NJK7 | Chromo domain-containing protein OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology