Basic Information
Locus ID:
Pt_Chr0200521
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Domain Homologous to E6-AP Carboxyl Terminus with
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 11621689 | 11631067 | + | Pt_Chr0200521 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.52 | 194,716.44 Da | 51.10 | 85.84 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00078 | HECTc | 1413 | 1804 | 9.55784E-115 | IPR000569 |
| Pfam | PF00632 | HECT-domain (ubiquitin-transferase) | 1510 | 1809 | 1.9E-75 | IPR000569 |
| SUPERFAMILY | SSF56204 | Hect, E3 ligase catalytic domain | 1405 | 1802 | 2.35E-92 | IPR035983 |
| SUPERFAMILY | SSF48371 | ARM repeat | 135 | 612 | 4.4E-37 | IPR016024 |
| Gene3D | G3DSA:3.30.2410.10 | Hect, E3 ligase catalytic domain | 1682 | 1807 | 1.2E-30 | - |
| Gene3D | G3DSA:3.90.1750.10 | Hect, E3 ligase catalytic domains | 1353 | 1605 | 9.7E-41 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 139 | 617 | 1.9E-47 | IPR011989 |
| SMART | SM00185 | arm_5 | 167 | 220 | 19.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 305 | 343 | 9.9 | IPR000225 |
| SMART | SM00185 | arm_5 | 222 | 263 | 60.0 | IPR000225 |
| SMART | SM00119 | hect_3 | 1427 | 1809 | 4.1E-70 | IPR000569 |
| ProSiteProfiles | PS50237 | HECT domain profile. | 1453 | 1809 | 52.15015 | IPR000569 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1004 | 1038 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 84 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 8 | 23 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 472 | 497 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 615 | 651 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 932 | 974 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 615 | 629 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 932 | 1042 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1084 | 1103 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 473 | 487 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G38600.1 | HEAT repeat ;HECT-domain (ubiquitin-transferase). encodes a member of HECT ubiquitin protein ligase family that is involved in trichome cell morphogenesis. Mutants in this gene exhibit supernumerary trichome branches and increased DNA content. | 0 |
| RefSeq | XP_047080766.1 | E3 ubiquitin-protein ligase UPL3-like [Lolium rigidum] | 0 |
| Q6WWW4 | E3 ubiquitin-protein ligase UPL3 OS=Arabidopsis thaliana OX=3702 GN=UPL3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6QB19 | HECT-type E3 ubiquitin transferase OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology