Basic Information
Locus ID:
Pt_Chr0200369
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
ABC transporter C family member 3
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 7854008 | 7874240 | - | Pt_Chr0200369 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.07 | 342,133.84 Da | 38.51 | 103.22 | 0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03250 | ABCC_MRP_domain1 | 2258 | 2458 | 6.33809E-111 | - |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 321 | 608 | 6.44884E-93 | IPR044746 |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 1945 | 2232 | 3.43345E-99 | IPR044746 |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 942 | 1236 | 4.30491E-91 | IPR044726 |
| CDD | cd03244 | ABCC_MRP_domain2 | 2883 | 3103 | 6.72294E-119 | - |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 2566 | 2860 | 4.71037E-88 | IPR044726 |
| CDD | cd03250 | ABCC_MRP_domain1 | 634 | 834 | 3.65199E-108 | - |
| CDD | cd03244 | ABCC_MRP_domain2 | 1259 | 1479 | 5.75657E-118 | - |
| Pfam | PF00664 | ABC transporter transmembrane region | 1950 | 2210 | 1.4E-20 | IPR011527 |
| Pfam | PF00664 | ABC transporter transmembrane region | 326 | 586 | 8.6E-21 | IPR011527 |
| Pfam | PF00664 | ABC transporter transmembrane region | 2569 | 2812 | 7.9E-30 | IPR011527 |
| Pfam | PF00664 | ABC transporter transmembrane region | 944 | 1188 | 9.4E-29 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 2902 | 3050 | 3.8E-27 | IPR003439 |
| Pfam | PF00005 | ABC transporter | 2276 | 2410 | 2.1E-19 | IPR003439 |
| Pfam | PF00005 | ABC transporter | 1278 | 1426 | 2.5E-27 | IPR003439 |
| Pfam | PF00005 | ABC transporter | 652 | 786 | 1.5E-18 | IPR003439 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 2565 | 2867 | 3.92E-53 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 2254 | 2479 | 3.33E-55 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1251 | 1491 | 1.18E-63 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 1934 | 2240 | 9.16E-31 | IPR036640 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 942 | 1243 | 2.62E-49 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 2875 | 3115 | 8.39E-64 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 310 | 616 | 1.7E-31 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 630 | 855 | 2.55E-54 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 2242 | 2490 | 2.3E-75 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 299 | 616 | 1.9E-46 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 1923 | 2240 | 4.0E-46 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 2528 | 2866 | 1.3E-63 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 904 | 1242 | 1.9E-59 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 2868 | 3121 | 2.2E-76 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 1245 | 1497 | 2.2E-75 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 619 | 866 | 1.3E-73 | IPR027417 |
| SMART | SM00382 | AAA_5 | 661 | 834 | 6.0E-12 | IPR003593 |
| SMART | SM00382 | AAA_5 | 2911 | 3102 | 4.7E-11 | IPR003593 |
| SMART | SM00382 | AAA_5 | 1287 | 1478 | 6.4E-11 | IPR003593 |
| SMART | SM00382 | AAA_5 | 2285 | 2458 | 1.1E-11 | IPR003593 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 320 | 600 | 29.943249 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 2885 | 3119 | 16.179945 | IPR003439 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1261 | 1495 | 16.306662 | IPR003439 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 2258 | 2481 | 23.08934 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 2568 | 2848 | 37.499413 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 634 | 857 | 22.462427 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 1944 | 2224 | 29.304379 | IPR011527 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 944 | 1224 | 35.288082 | IPR011527 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 2383 | 2397 | - | IPR017871 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 759 | 773 | - | IPR017871 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 889 | 914 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2512 | 2538 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13080.1 | multidrug resistance-associated protein 3. encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. | 0 |
| RefSeq | XP_051222906.1 | ABC transporter C family member 3-like [Lolium perenne] | 0 |
| Q9LK64 | ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A835M106 | ABC transporter C family member 3-like OS=Coptis chinensis OX=261450 GN=IFM89_021845 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology