Basic Information
Locus ID:
Pt_Chr0200368
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
ABC transporter C family member 3
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 7844156 | 7850284 | - | Pt_Chr0200368 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.00 | 165,978.31 Da | 37.92 | 105.31 | 0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 956 | 1250 | 2.47561E-91 | IPR044726 |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 326 | 613 | 1.3219E-88 | IPR044746 |
| CDD | cd03244 | ABCC_MRP_domain2 | 1273 | 1493 | 2.53546E-120 | - |
| CDD | cd03250 | ABCC_MRP_domain1 | 639 | 848 | 1.23889E-107 | - |
| Pfam | PF00664 | ABC transporter transmembrane region | 958 | 1201 | 3.7E-29 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 1292 | 1440 | 6.1E-28 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 331 | 592 | 1.1E-22 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 657 | 791 | 1.3E-19 | IPR003439 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 635 | 869 | 2.61E-51 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1265 | 1505 | 1.97E-64 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 315 | 621 | 4.05E-31 | IPR036640 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 955 | 1257 | 2.75E-50 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 303 | 620 | 3.9E-47 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 1259 | 1511 | 7.8E-77 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 918 | 1256 | 5.9E-61 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 621 | 880 | 5.2E-72 | IPR027417 |
| SMART | SM00382 | AAA_5 | 1301 | 1492 | 8.3E-11 | IPR003593 |
| SMART | SM00382 | AAA_5 | 666 | 848 | 1.1E-10 | IPR003593 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 639 | 871 | 21.888866 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 958 | 1238 | 34.841255 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1275 | 1509 | 16.633457 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 325 | 605 | 29.621912 | IPR011527 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 764 | 778 | - | IPR017871 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13080.1 | multidrug resistance-associated protein 3. encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. | 0 |
| RefSeq | XP_051222898.1 | ABC transporter C family member 3-like isoform X4 [Lolium perenne] | 0 |
| Q9LK64 | ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6EEK4 | ABC transporter C family member 3 OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology