Basic Information
Locus ID:
Pt_Chr0200367
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
ABC transporter C family member 3
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 7768127 | 7774524 | - | Pt_Chr0200367 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.13 | 138,875.81 Da | 37.21 | 105.44 | 0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03250 | ABCC_MRP_domain1 | 383 | 583 | 5.80029E-107 | - |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 70 | 357 | 9.34908E-76 | IPR044746 |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 691 | 985 | 1.0231E-87 | IPR044726 |
| CDD | cd03244 | ABCC_MRP_domain2 | 1008 | 1228 | 7.26188E-111 | - |
| Pfam | PF00664 | ABC transporter transmembrane region | 75 | 336 | 3.1E-16 | IPR011527 |
| Pfam | PF00664 | ABC transporter transmembrane region | 693 | 936 | 2.4E-29 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 1027 | 1175 | 2.9E-22 | IPR003439 |
| Pfam | PF00005 | ABC transporter | 401 | 535 | 8.4E-19 | IPR003439 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 999 | 1240 | 5.81E-58 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 691 | 992 | 2.22E-47 | IPR036640 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 59 | 365 | 1.57E-27 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 379 | 604 | 2.27E-54 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 653 | 991 | 1.2E-56 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 994 | 1246 | 2.3E-70 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 47 | 365 | 1.6E-41 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 368 | 615 | 1.6E-73 | IPR027417 |
| SMART | SM00382 | AAA_5 | 410 | 583 | 7.8E-12 | IPR003593 |
| SMART | SM00382 | AAA_5 | 1036 | 1227 | 1.5E-5 | IPR003593 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1010 | 1244 | 14.452597 | IPR003439 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 383 | 606 | 23.369452 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 69 | 349 | 25.705027 | IPR011527 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 693 | 973 | 34.113018 | IPR011527 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 508 | 522 | - | IPR017871 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13080.1 | multidrug resistance-associated protein 3. encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. | 0 |
| RefSeq | XP_051222906.1 | ABC transporter C family member 3-like [Lolium perenne] | 0 |
| Q9LK64 | ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0Q3MEV5 | ABC transporter C family member 3 OS=Brachypodium distachyon OX=15368 GN=100842637 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology