Basic Information
Locus ID:
Pt_Chr0200097
Species & Taxonomic ID:
Puccinellia tenuiflora & 240906
Genome Assembly:
GCA_012064385.1
Description:
Ring finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr02 | 2219414 | 2219842 | - | Pt_Chr0200097 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.92 | 14,412.34 Da | 43.39 | 87.18 | 0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 81 | 123 | 2.7E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 81 | 132 | 1.44E-12 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 55 | 126 | 2.4E-13 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 81 | 123 | 9.361642 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_047071769.1 | putative RING-H2 finger protein ATL69 [Lolium rigidum] | 0 |
| Q4V7B8 | RING finger protein 44 OS=Rattus norvegicus OX=10116 GN=Rnf44 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3B6LSL6 | RING-type domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 7 | AH01.1316, AH01.1317, BH01.1369, BH01.1370, BH01.1371 ... |
| Poaceae | Eleusine coracana subsp. coracana | 5 | gene-QOZ80_3AG0223860, gene-QOZ80_3AG0223890 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.5HG0507880.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 12 | gene-QYE76_063340, gene-QYE76_063341, gene-QYE76_063342 ... |
| Poaceae | Oryza sativa | 2 | LOC_Os03g44636.1, LOC_Os03g44642.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G142000 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0200097 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr01G009170, Chr04G025050 |
| Poaceae | Thinopyrum elongatum | 3 | Tel5E01G592800, Tel5E01G592900, Tel5E01G593100 |
| Poaceae | Triticum aestivum | 7 | TraesCS5A02G372500.1.cds1, TraesCS5A02G372600.1.cds1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb050250_P001, Zm00001eb050260_P001 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g3168, Zma_g850 |